View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_70 (Length: 293)
Name: NF1145_high_70
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_70 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 45624559 - 45624409
Alignment:
| Q |
8 |
attattttcaccagaaatctcaaactgtacaacaaaatatgggttatgggtaaaattgaaacaattgagagcttaatttcttcaaactttgaatttattt |
107 |
Q |
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| T |
45624559 |
attattctcaccagaaatctcaaactgtacaacaaaatatgggttatgggtaaaactgaaacaattgagagctcaatttcttcaaactttgaatatattt |
45624460 |
T |
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| Q |
108 |
atacgaattttataaccgtaacataagatttgagggaagaaatggagtttg |
158 |
Q |
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| T |
45624459 |
atacgaattttgtaaccgtaacataagatttgagggaagaaatgaagtttg |
45624409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 48225932 - 48226077
Alignment:
| Q |
8 |
attattttcaccagaaatctcaaactgtacaacaaaatatgggttatgggtaaaattgaaacaattgagagcttaatttcttcaaactttgaatttattt |
107 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
48225932 |
attattctcaccagaaatctcaaac-----aacaaaatatgggttatgggtaaaactgaaacaattgagagctcaatttcttcaaactttgaatatattt |
48226026 |
T |
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| Q |
108 |
atacgaattttataaccgtaacataagatttgagggaagaaatggagtttg |
158 |
Q |
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| T |
48226027 |
atacgaattttgtaaccgtaacataagatttgagggaagaaatgaagtttg |
48226077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 38614675 - 38614717
Alignment:
| Q |
20 |
agaaatctcaaactgtacaacaaaatatgggttatgggtaaaa |
62 |
Q |
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| T |
38614675 |
agaaatctcaaactgtacaacaaacaatgggttataggtaaaa |
38614717 |
T |
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