View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_76 (Length: 281)
Name: NF1145_high_76
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_76 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 42576774 - 42576959
Alignment:
| Q |
32 |
aattggttcaaatgttaataccatgaacgtttctttatttcacagtatcaaatctagtacatgaccattgttttcgactttt-aaataaaaaacttgatg |
130 |
Q |
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| T |
42576774 |
aattggttcaaatgttaataccatgaatgtttctttatttcacagtatcaaatctagtacatgaccattgttttcgactttttaaataaaaaactcgatg |
42576873 |
T |
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| Q |
131 |
catataaacttgaaaaaacttattagataacgctttgtcaaacttattagtaaaggagggcag-aaatcacatttgtcagtaagtact |
217 |
Q |
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| T |
42576874 |
catataaacttgaaaaaacatattagataacgctttgtcaaacttattagtaaaggagggcagaaaatcaca--tgtcagtaagtact |
42576959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 14952105 - 14952228
Alignment:
| Q |
28 |
aactaattggttcaaatgttaataccatgaacgtttctttatttcacagtatcaaatctagtacatgacc--attgttttcgac-ttttaaataaaaaac |
124 |
Q |
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||||| || |||||||| | ||||| ||||||| |||||||||||||| ||||| ||||||||||||| || ||||| || |||||||| |||||| |
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| T |
14952105 |
aactagttagttcaaatttgaatactgtgaacgtatctttatttcacagcatcaaggctagtacatgacccattttttttccactttttaaatcaaaaac |
14952204 |
T |
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| Q |
125 |
ttgatgcatataaacttgaaaaaa |
148 |
Q |
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| T |
14952205 |
ttcgtgcatataaacttgaaaaaa |
14952228 |
T |
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