View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_82 (Length: 265)
Name: NF1145_high_82
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_82 |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 47333288 - 47333339
Alignment:
| Q |
117 |
tcacgttaattaacaacttgtcattgttgttaccggcaaccatgagtctttt |
168 |
Q |
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| T |
47333288 |
tcacgttaattaacaacttgtcattgttgttaccggcaaccatgagtctttt |
47333339 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 47333172 - 47333225
Alignment:
| Q |
2 |
gagaaatacaaaagagagaaataaattacttttttggattgacagataagcccc |
55 |
Q |
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| T |
47333172 |
gagaaatacaaaagagatgaatatattacttttttggattgacaaataagcccc |
47333225 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 35559730 - 35559780
Alignment:
| Q |
5 |
aaatacaaaagagagaaataaattacttttttggattgacagataagcccc |
55 |
Q |
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| T |
35559730 |
aaatataaaagagataaatatattacttttttggattgacaaataagcccc |
35559780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9821391 - 9821444
Alignment:
| Q |
1 |
agagaaatacaaaagagagaaataaattacttttttggattgacagataagccc |
54 |
Q |
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| T |
9821391 |
agagaaatatagaaaagagaaatatattacttttttggattgacaaataagccc |
9821444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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