View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_high_85 (Length: 261)
Name: NF1145_high_85
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_85 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 31787516 - 31787300
Alignment:
| Q |
16 |
gacaggaaccggaacaaccggctatggagctaccggtggcggaactggagtaggatatggcggaactggacatgataatagaggggtaatggacaagatt |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31787516 |
gacaggaactggaacaaccggctatggagctaccggtggcggaactggagtaggatatggcggaactggacatgataatagaggggtaatggacaagatt |
31787417 |
T |
|
| Q |
116 |
aaggagaaaattcctggtactgatcaaaatgctagtacttatgggacaggaacaggatatggaacaactggtattggtcatcaacaacatggaggagata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31787416 |
aaggagaaaattcctggtactgatcaaaatgctagtacttatgggacaggaacaggatatggaacaactggtattggtcatcaacaacatggaggagata |
31787317 |
T |
|
| Q |
216 |
atagaggggttatggac |
232 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
31787316 |
acagaggggttatggac |
31787300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 31787320 - 31787264
Alignment:
| Q |
89 |
gataatagaggggtaatggacaagattaaggagaaaattcctggtactgatcaaaat |
145 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31787320 |
gataacagaggggttatggacaagattaaggagaaaattcctggtactgatcaaaat |
31787264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 31787168 - 31787120
Alignment:
| Q |
97 |
aggggtaatggacaagattaaggagaaaattcctggtactgatcaaaat |
145 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
31787168 |
aggggttatggacaagattaaggagaagattcctggtactgaacaaaat |
31787120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University