View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_high_87 (Length: 256)
Name: NF1145_high_87
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_high_87 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 51156943 - 51156717
Alignment:
| Q |
1 |
caagaagtttctttttaaatgaagatttgaaagttcacctgaggaagtttatctataaatttggcagcgttagcaagttctgctgcaactctgatttctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51156943 |
caagaagtttctttttaaatgaagatttgaaagttcacctgaggaagtttatctataaatttggcagcgttaccaagttctgctgcaactctgatttctt |
51156844 |
T |
|
| Q |
101 |
catcagttgcacagtccttcccatatgcaatattctccttaatgctacaaagtaaacagaacgggttcctgtcagactaggcctattttctgtctgatcc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||| |
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| T |
51156843 |
catcagttgcacagtccttgccatatgcaatattctccttaatgctac-aagtaaagagaacgggttcctggctgactaggcctattttctgtctgatcc |
51156745 |
T |
|
| Q |
201 |
attttagttgaaattctctgaggttgat |
228 |
Q |
| |
|
||||||||||||||||| |||||||||| |
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|
| T |
51156744 |
attttagttgaaattctttgaggttgat |
51156717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 51145797 - 51145576
Alignment:
| Q |
6 |
agtttctttttaaatgaagatttgaaagttcacctgaggaagtttatctataaatttggcagcgttagcaagttctgctgcaactctgatttcttcatca |
105 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51145797 |
agtttctttttaaatgaagatttgagatttcacctgaggaagtttatctataaatttagcagcattagcaagttctgctgcaactctgatttcttcatca |
51145698 |
T |
|
| Q |
106 |
gttgcacagtccttcccatatgcaatattctccttaatgctacaaagtaaacagaacgggttcctgtcagactaggcctattttctgtctgatccatttt |
205 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
51145697 |
gttgcacagtccttgccatatgcaatattctccttaatgctac-aagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttt |
51145599 |
T |
|
| Q |
206 |
agttgaaattctctgaggttgat |
228 |
Q |
| |
|
|||||||||||| |||||||||| |
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|
| T |
51145598 |
agttgaaattctttgaggttgat |
51145576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 51199769 - 51199566
Alignment:
| Q |
23 |
agatttgaaagttcacctgaggaagtttatctataaatttggcagcgttagcaagttctgctgcaactctgatttcttcatcagttgcacagtccttccc |
122 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||||| || |
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|
| T |
51199769 |
agatttaacagttcacctgaggaagtttatctataaatttggcagcattagcaagctcggctgcagctctgatttcttcatcagtagcaccatccttgcc |
51199670 |
T |
|
| Q |
123 |
atatgcaatattctccttaatgctacaaagtaaacagaacgggttcctgtcagactaggcctattttctgtctgatccattttagttgaaattctctgag |
222 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||||| ||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
51199669 |
atatgcaatgttctctttaatgctgc-aagtaaagagaacaggttcctggctgactaggcctattttctgtctgatccatttcagttgaaattctttgag |
51199571 |
T |
|
| Q |
223 |
gttga |
227 |
Q |
| |
|
||||| |
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|
| T |
51199570 |
gttga |
51199566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 29937131 - 29937352
Alignment:
| Q |
7 |
gtttctttttaaatgaa-gatttgaaagttcacctgaggaagtttatctataaatttggcagcgttagcaagttctgctgcaactctgatttcttcatca |
105 |
Q |
| |
|
||||||||| ||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||| |||| ||||| ||| || |
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|
| T |
29937131 |
gtttcttttgaaatgaaagatttgagaattcacctgagggagtttgtctataaatttggcagcattagcaagttccgctgcagctcttatttcctcaaca |
29937230 |
T |
|
| Q |
106 |
gttgcacagtccttcccatatgcaatattctccttaatgctacaaagtaaacagaacgggttcctgtcagactaggcctattttctgtctgatccatttt |
205 |
Q |
| |
|
||||| | ||||| ||||| | |||||||| ||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
29937231 |
gttgccccatccttgccataggaaatattcttcttaatgctac-aagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttc |
29937329 |
T |
|
| Q |
206 |
agttgaaattctctgaggttgat |
228 |
Q |
| |
|
|| | ||||||| ||||| |||| |
|
|
| T |
29937330 |
agattaaattctttgaggctgat |
29937352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 51212897 - 51212715
Alignment:
| Q |
41 |
gaggaagtttatctataaatttggcagcgttagcaagttctgctgcaactctgatttcttcatcagttgcacagtccttcccatatgcaatattctcctt |
140 |
Q |
| |
|
|||||| |||||| || || || ||||| |||||||||||||||||| ||| |||||||||||| ||||| ||||| ||||| ||||| ||||| || |
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|
| T |
51212897 |
gaggaaatttatcgatgaagttagcagcattagcaagttctgctgcagctcggatttcttcatcggttgccgcatccttaccataggcaatgttctcttt |
51212798 |
T |
|
| Q |
141 |
aatgctacaaagtaaacagaacgggttcctgtcagactaggcctattttctgtctgatccattttagttgaaattctctgaggt |
224 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| | ||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
51212797 |
aatgctacaa-gtaaagagaactggttcctgactcactaggcctattttctgtctgatccatttcaattgaaattctctgaggt |
51212715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 49737140 - 49737303
Alignment:
| Q |
64 |
gcagcgttagcaagttctgctgcaactctgatttcttcatcagttgcacagtccttcccatatgcaatattctccttaatgctacaaagtaaacagaacg |
163 |
Q |
| |
|
||||| ||||| ||||||| |||| |||||||||||||||| ||||| | ||||| ||||| ||||| ||||| |||||||||||| ||||| ||||| |
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|
| T |
49737140 |
gcagctttagctagttctgttgcagctctgatttcttcatctgttgctccatccttaccataggcaatgttctctttaatgctacaa-gtaaagagaact |
49737238 |
T |
|
| Q |
164 |
ggttcctgtcagactaggcctattttctgtctgatccattttagttgaaattctctgaggttgat |
228 |
Q |
| |
|
|||||||| | ||||| ||||||||| |||||||||||||| |||||||||||| |||||||||| |
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|
| T |
49737239 |
ggttcctgactgactaagcctattttttgtctgatccatttcagttgaaattctttgaggttgat |
49737303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 36285999 - 36285934
Alignment:
| Q |
152 |
gtaaacagaacgggttcctgtcagactaggcctattttctgtctgatccattttagttgaaattct |
217 |
Q |
| |
|
||||||||||| || ||||| | ||| | ||||||||||||||| |||||||| || ||||||||| |
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|
| T |
36285999 |
gtaaacagaactggctcctgactgaccaagcctattttctgtctaatccatttaagctgaaattct |
36285934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 38525680 - 38525789
Alignment:
| Q |
37 |
acctgaggaagtttatctataaatttggcagcgttagcaagttctgctgcaactctgatttcttcatcagttgcacagtccttcccatatgcaatattct |
136 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||| |||||||| | |||| ||| ||||||||| ||||| | || || ||||||||||| || | |
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|
| T |
38525680 |
acctgtggaagtttatcaatgaatttggcggcgtttgcaagttcggatgcagatcttatttcttcaattgttgctccatctttaccatatgcaatgttat |
38525779 |
T |
|
| Q |
137 |
ccttaatgct |
146 |
Q |
| |
|
|||||||||| |
|
|
| T |
38525780 |
ccttaatgct |
38525789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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