View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_high_92 (Length: 251)

Name: NF1145_high_92
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_high_92
NF1145_high_92
[»] chr1 (13 HSPs)
chr1 (28-251)||(25478800-25479024)
chr1 (28-123)||(25869157-25869253)
chr1 (123-186)||(24629199-24629262)
chr1 (205-251)||(25869248-25869294)
chr1 (123-187)||(25610954-25611018)
chr1 (123-246)||(23896125-23896248)
chr1 (123-225)||(24513017-24513119)
chr1 (132-187)||(24246494-24246549)
chr1 (124-201)||(24242846-24242923)
chr1 (123-226)||(24221984-24222087)
chr1 (133-187)||(24634803-24634857)
chr1 (134-186)||(24626771-24626823)
chr1 (134-168)||(24233418-24233452)
[»] chr4 (1 HSPs)
chr4 (123-248)||(11032848-11032973)
[»] chr7 (1 HSPs)
chr7 (123-187)||(1421157-1421221)
[»] scaffold0015 (2 HSPs)
scaffold0015 (123-198)||(32317-32392)
scaffold0015 (123-187)||(40369-40433)
[»] chr5 (1 HSPs)
chr5 (132-231)||(3181672-3181771)
[»] chr3 (9 HSPs)
chr3 (136-187)||(2696733-2696784)
chr3 (136-187)||(4142135-4142186)
chr3 (136-187)||(4157945-4157996)
chr3 (136-186)||(7942485-7942535)
chr3 (136-188)||(3754598-3754650)
chr3 (123-186)||(2456249-2456312)
chr3 (136-186)||(1437996-1438045)
chr3 (137-186)||(13498224-13498273)
chr3 (136-184)||(23197014-23197062)
[»] chr2 (2 HSPs)
chr2 (136-186)||(36577366-36577416)
chr2 (124-186)||(7160743-7160805)
[»] chr6 (1 HSPs)
chr6 (136-185)||(24417487-24417536)
[»] scaffold0044 (1 HSPs)
scaffold0044 (136-188)||(89141-89193)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 25479024 - 25478800
Alignment:
Q  28 tagaaaactctctaaacaagagcagcacattgttgtcatcctcataaatgtataccatcttaggatcctgacaataaagactaaggga-gaagaaaaagg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  25479024 tagaaaactctctaaacaagagcagcacattgttgtcatcctcagaaatgtataccatcttaggatcctgacaataaagaccaagggaagaagaaaaagg 25478925  T
Q  127 aagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaacaatcc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25478924 aagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcaagaaaatacacacaaacaatcc 25478825  T
Q  227 ttcatgatacccaacgtcaagttac 251  Q
    |||||||||||||||||||||||||    
T  25478824 ttcatgatacccaacgtcaagttac 25478800  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 25869157 - 25869253
Alignment:
Q  28 tagaaaactctctaaacaagagcagcacattgttgtcatcctcataaatgtataccatcttaggatcctgacaataaagactaaggg-agaagaaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  25869157 tagaaaactctctaaacaagagcagcacattgttgtcatccacagaaatgtataccatcttaggatcctgacaataaagaccaagggaagaagaaaa 25869253  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 24629199 - 24629262
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  24629199 aaggaagatggatgaatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 25869248 - 25869294
Alignment:
Q  205 agaaaatacacacaaacaatccttcatgatacccaacgtcaagttac 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25869248 agaaaatacacacaaacaatccttcatgatacccaacgtcaagttac 25869294  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 25610954 - 25611018
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||    
T  25610954 aaggaagatgaatcaatttaacccaagattctttatttccgtattccgtcattagccaaacatca 25611018  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 23896125 - 23896248
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 222  Q
    |||||| ||| || ||||||| |||||| |||||||| || |||||||||||||||||||||||||| || |||| |||   || |||||| ||||  ||    
T  23896125 aaggaacatgaataaatttaacccaagactctttatttccatattccttcataagccaaacatcaataaaagagtaagaattagcaaatacgcacaggca 23896224  T
Q  223 atccttcatgatacccaacgtcaa 246  Q
    |||| |||| |||||||| |||||    
T  23896225 atccctcatcatacccaaggtcaa 23896248  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 24513119 - 24513017
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 222  Q
    ||||||||||||||||||||||||| || |||||| | || ||||| |||||||||||||||||| | || |||| |||  ||||| |||  ||||||||    
T  24513119 aaggaagatggatcaatttaatccatgactctttacttccatattctttcataagccaaacatcattgaaagagttagaatgagaacatatgcacaaaca 24513020  T
Q  223 atc 225  Q
    |||    
T  24513019 atc 24513017  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 24246494 - 24246549
Alignment:
Q  132 ggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    |||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||    
T  24246494 ggatcaatttcatccaagactctttatttccgtattctttcataagccaaacatca 24246549  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 24242846 - 24242923
Alignment:
Q  124 aggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcaga 201  Q
    ||||||| | || |||||||||||||| |||||||| ||||||  ||||||||||||||||||| | || ||||||||    
T  24242846 aggaagacgaattaatttaatccaagactctttatttccgtatatcttcataagccaaacatcagtaaaagagtcaga 24242923  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 24221984 - 24222087
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 222  Q
    |||||||| ||||||| |||| ||||||||||| |||  |||| ||| ||| ||||||||||||| | |||||||| ||  |||||| ||  ||||||||    
T  24221984 aaggaagacggatcaacttaacccaagattcttgattttcgtaatccatcaaaagccaaacatcattaaatgagtcggaatgagaaactatgcacaaaca 24222083  T
Q  223 atcc 226  Q
    ||||    
T  24222084 atcc 24222087  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 24634803 - 24634857
Alignment:
Q  133 gatcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    |||||||| |||| |||| |||||| | |||||||||||||||||||||||||||    
T  24634803 gatcaattcaatctaagactctttaattccgtattccttcataagccaaacatca 24634857  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 24626771 - 24626823
Alignment:
Q  134 atcaatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    |||||||||| |||||| |||||| | | ||||||||||||||||||||||||    
T  24626771 atcaatttaacccaagactctttaattctgtattccttcataagccaaacatc 24626823  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 24233418 - 24233452
Alignment:
Q  134 atcaatttaatccaagattctttattaccgtattc 168  Q
    |||||||||||||||||||||||||| ||||||||    
T  24233418 atcaatttaatccaagattctttatttccgtattc 24233452  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 11032973 - 11032848
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 222  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||  | || |||| |||    ||||||| |||||  ||    
T  11032973 aaggaagatggatcaatttaatccaagactctttatttccgtattccttcatgagccaaacatcggtaaaagagtgagaatatgaaaatatacacaggca 11032874  T
Q  223 atccttcatgatacccaacgtcaagt 248  Q
    |||| |||| |||||||| |||||||    
T  11032873 atccctcatcatacccaaggtcaagt 11032848  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 1421157 - 1421221
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  1421157 aaggaagatgaatcaatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

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Target: scaffold0015 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 32317 - 32392
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtc 198  Q
    |||||||| | ||||||||||||||||| |||||||| || |||||||||||||||||||||||||| || |||||    
T  32317 aaggaagacgaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcaataaaagagtc 32392  T

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Target: scaffold0015; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 40369 - 40433
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    |||||||| | ||||||||||||||||| ||||||||  | ||||||||||||||||||||||||    
T  40369 aaggaagacgaatcaatttaatccaagagtctttattttcatattccttcataagccaaacatca 40433  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 3181771 - 3181672
Alignment:
Q  132 ggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaacaatccttcat 231  Q
    ||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||   || ||||| ||  ||||||||||||||||||| ||| ||||    
T  3181771 ggatcaatttaatccaagactcttcatttccatattccttcataagccaaacatcatcaaaagagtcggaatgagaaaatacacacaaacattccctcat 3181672  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 2696733 - 2696784
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    ||||||||||||||| |||||||| || ||||||||||||| ||||||||||    
T  2696733 caatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 4142135 - 4142186
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  4142135 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 4157945 - 4157996
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 187  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  4157945 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 7942535 - 7942485
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    ||||||||||||||| ||||||||||| || |||||||||| |||||||||    
T  7942535 caatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 3754650 - 3754598
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatcaa 188  Q
    ||||||| ||||||| |||||||| || ||||||||||||| |||||||||||    
T  3754650 caatttagtccaagactctttatttccatattccttcataacccaaacatcaa 3754598  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 2456312 - 2456249
Alignment:
Q  123 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    |||||| ||||  ||||||| ||||||| |||||||| || ||||||||||||| |||||||||    
T  2456312 aaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 1438045 - 1437996
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    ||||||||||||||| |||||||| || ||||||||||||| |||||||||    
T  1438045 caatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  137 aatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    |||||| ||||||| |||||||| || ||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 23197062 - 23197014
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaaca 184  Q
    ||||||| |||||||||||| ||| || ||||||||||| |||||||||    
T  23197062 caatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 36577416 - 36577366
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    ||||||||||||||| |||||||| || ||||||||||||| |||||||||    
T  36577416 caatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 7160743 - 7160805
Alignment:
Q  124 aggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatc 186  Q
    ||||||| ||| ||||||| ||||||| || ||||| || || ||||||||||||||||||||    
T  7160743 aggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 24417487 - 24417536
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacat 185  Q
    ||||||| |||||||||||||||| || ||||| ||||||| ||||||||    
T  24417487 caatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 89193 - 89141
Alignment:
Q  136 caatttaatccaagattctttattaccgtattccttcataagccaaacatcaa 188  Q
    ||||||| ||||||| |||||||| || ||||||||||||| ||||| |||||    
T  89193 caatttagtccaagactctttatttccatattccttcataacccaaatatcaa 89141  T

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