View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_high_95 (Length: 251)

Name: NF1145_high_95

Description: NF1145

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1145_high_95

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 177; E-Value: 2e-95

Query Start/End: Original strand, 1 - 181

Target Start/End: Original strand, 52380206 - 52380386

Alignment:

Q	1	aaattcttaagaattttacagccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacataaggcaaagaaaga	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	52380206	aaattcttaagaattttacagccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacatgaggcaaagaaaga	52380305	T

Q	101	tattatgcgtcctttcattcaagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg	181	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52380306	tattatgcgtcctttcattcaagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg	52380386	T

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Target: chr3; HSP #2

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 202 - 240

Target Start/End: Original strand, 52380400 - 52380438

Alignment:

Q	202	ctacttactcttttttctcgatcacatcattatattcat	240	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52380400	ctacttactcttttttctcgatcacatcattatattcat	52380438	T

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