View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_1 (Length: 881)

Name: NF1145_low_1
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_1
NF1145_low_1
[»] chr4 (3 HSPs)
chr4 (55-873)||(25898379-25899201)
chr4 (786-820)||(6230039-6230073)
chr4 (85-138)||(34810536-34810589)
[»] chr6 (1 HSPs)
chr6 (95-306)||(16488309-16488516)
[»] chr5 (3 HSPs)
chr5 (95-306)||(21814394-21814601)
chr5 (830-872)||(12866195-12866237)
chr5 (830-872)||(12834217-12834259)
[»] chr3 (1 HSPs)
chr3 (443-638)||(37423050-37423243)
[»] chr2 (2 HSPs)
chr2 (74-138)||(37726506-37726570)
chr2 (149-186)||(37726426-37726463)
[»] chr8 (2 HSPs)
chr8 (171-274)||(19461805-19461908)
chr8 (171-274)||(19559483-19559586)
[»] chr7 (1 HSPs)
chr7 (830-872)||(46006445-46006487)


Alignment Details
Target: chr4 (Bit Score: 712; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 55 - 873
Target Start/End: Complemental strand, 25899201 - 25898379
Alignment:
Q  55 aattttgtaagattagtagtcttattttctaaaaattattcaagactgaagctcaaaagagttagaatgggataggcacagg--caggcacatgcacaag 152  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  25899201 aattttgttagattagtagtcttattttctaaaaattatccaagactgaagctcaaaagagttagaatgggataggcacaggtacaggcacatgcacaag 25899102  T
Q  153 taataatccctcagataagttttttactcataagtggaaatggaaattgtctattctttttcagttagcaggcccagttatggctaataggaaaacatga 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25899101 taataatccctcagataagttttttactcataagtggaaatggaaattgtatattctttttcagttagcaggcccagttatgcctaataggaaaacatga 25899002  T
Q  253 ctgacaaagtgcacaatgttctccaactttcttagctatatattctacttatagaactctatttcaacttgaactataatcaaaattgcatcatggtcat 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25899001 ctgacaaagtgcacaatgttctccaactttcttagctatatattctacttatagaactctatttcaacttgaactataatcacaattgcatcatggtcat 25898902  T
Q  353 ttagcacactcctaaaagtttcaaattatcataacttaccgatttagttatt-gatatttagttggttactaaagcatgttag---tttttatttttcta 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||   ||||| ||||||||    
T  25898901 ttagcacactcctaaaagtttcaaattatcataacttaccgatttagttattcaatatttagttggttactaaagcatgttagttttttttttttttcta 25898802  T
Q  449 gcacttccccaatatgatctcgatcaatgtcattcccaacacacaagagggcattacattgcaggattggaataccgccaaaaaatatgactgcaaactt 548  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25898801 gcacttccccaatatgatctcgatcaatgtcattcccgacacacaagagagcattacattgcaggattggaataccgccaaaaaatatgactgcaaactt 25898702  T
Q  549 atcacttcaaataggggtccgaatgaaaaatatttaagaggaagattggaacaaatttctgaaggatagtaaattgcgtcaaggggatagcttggtattt 648  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  25898701 atcactttaaataggggtccgaatgaaaaatattt-agaggaagattggaacaaatttctgaaggatagtaaattgcgtcaaggggatagtttggtcttt 25898603  T
Q  649 gatcttgaggatcttcctaactcactatttgttgagattgttcgccagaaaggtcgtcattagacttacaagcatatcatatgaggttcctcttcatgtg 748  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  25898602 gatcttgaggatcctcctaactcactatttgttgagattgttcgccagaaaggtcgtcattagacttgcaagcatatcatataaggttcctcttcatgtg 25898503  T
Q  749 ttttattttgttgtaaatacctgttatgcctcagacaatggcattgtgttttgagtttttctaccatgatactcctaattccctatgttcctataagttg 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  25898502 ttttattttgttgtaaatacctgttatgcctcagacaatggcattgtgttttgagtttttctcccatgatactcctaatt-cctatgttcctataagttg 25898404  T
Q  849 tgtgctttaatattgttcctatgat 873  Q
    |||||||||||||||||||||||||    
T  25898403 tgtgctttaatattgttcctatgat 25898379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 786 - 820
Target Start/End: Original strand, 6230039 - 6230073
Alignment:
Q  786 atggcattgtgttttgagtttttctaccatgatac 820  Q
    |||||||||||||||||||||| ||||||||||||    
T  6230039 atggcattgtgttttgagttttgctaccatgatac 6230073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 34810536 - 34810589
Alignment:
Q  85 aaaaattattcaagactgaagctcaaaagagttagaatgggataggcacaggca 138  Q
    |||||||||  |||| | ||||||||| |||||||||||| |||||||||||||    
T  34810536 aaaaattatctaagattaaagctcaaaggagttagaatggcataggcacaggca 34810589  T

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Target: chr6 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 95 - 306
Target Start/End: Complemental strand, 16488516 - 16488309
Alignment:
Q  95 caagactgaagctcaaaagagttagaatgggataggcacaggcaggcacatgcacaagtaataatccctcagataagttttttactcataagtggaaatg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  16488516 caagactgaagctcaaaagagttagaatgggataggcacaggca----catgcccaagtaataatccctcagataagttttttactcataagtagaaatg 16488421  T
Q  195 gaaattgtctattctttttcagttagcaggcccagttatggctaataggaaaacatgactgacaaagtgcacaatgttctccaactttcttagctatata 294  Q
    |||||||||| || |||||||||||||| |||||  ||||| |||||||||||||||||||  ||||||||||||||||| ||||||| |||||||||||    
T  16488420 gaaattgtcttttatttttcagttagcaagcccaactatgggtaataggaaaacatgactggtaaagtgcacaatgttctgcaacttttttagctatata 16488321  T
Q  295 ttctacttatag 306  Q
    |  |||||||||    
T  16488320 tattacttatag 16488309  T

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Target: chr5 (Bit Score: 139; Significance: 3e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 95 - 306
Target Start/End: Original strand, 21814394 - 21814601
Alignment:
Q  95 caagactgaagctcaaaagagttagaatgggataggcacaggcaggcacatgcacaagtaataatccctcagataagttttttactcataagtggaaatg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  21814394 caagactgaagctcaaaagagttagaatgggataggcacagg----cacatgcccaagtaataatccctcagataagttttttactcataagtagaaatg 21814489  T
Q  195 gaaattgtctattctttttcagttagcaggcccagttatggctaataggaaaacatgactgacaaagtgcacaatgttctccaactttcttagctatata 294  Q
    |||||||||| || |||||||||||||| |||||  ||||| |||||||||||||||||||  ||||||||||||||||| ||||||| |||||||||||    
T  21814490 gaaattgtcttttatttttcagttagcaagcccaactatgggtaataggaaaacatgactggtaaagtgcacaatgttctgcaacttttttagctatata 21814589  T
Q  295 ttctacttatag 306  Q
    |  |||||||||    
T  21814590 tattacttatag 21814601  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 830 - 872
Target Start/End: Original strand, 12866195 - 12866237
Alignment:
Q  830 cctatgttcctataagttgtgtgctttaatattgttcctatga 872  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  12866195 cctatgttcctataatttatgtgctttaatattgttcctatga 12866237  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 830 - 872
Target Start/End: Original strand, 12834217 - 12834259
Alignment:
Q  830 cctatgttcctataagttgtgtgctttaatattgttcctatga 872  Q
    |||| |||||||||| || ||||||||||||||||||||||||    
T  12834217 cctacgttcctataatttatgtgctttaatattgttcctatga 12834259  T

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Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 443 - 638
Target Start/End: Complemental strand, 37423243 - 37423050
Alignment:
Q  443 tttctagcacttccccaatatgatctcgatcaatgtcattcccaacacacaagagggcattacattgcaggattggaataccgccaaaaaatatgactgc 542  Q
    ||||||||||||||||||||||||||| ||||| ||  ||||  |||||||  |   |||||||||   | |||||||||||   ||| |||| || |||    
T  37423243 tttctagcacttccccaatatgatctccatcaacgtacttccggacacacagtacaccattacattagtgaattggaatacccaaaaacaatacgagtgc 37423144  T
Q  543 aaacttatcacttcaaataggggtccgaatgaaaaatatttaagaggaagattggaacaaatttctgaaggatagtaaattgcgtcaaggggatag 638  Q
    ||||||| ||||||||| |||||||| |||||||||||| || || || |||||||||||||||||||| ||||  |||||||||||| |||||||    
T  37423143 aaacttaccacttcaaacaggggtccaaatgaaaaatatctagga-gaggattggaacaaatttctgaa-gataacaaattgcgtcaaagggatag 37423050  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 37726570 - 37726506
Alignment:
Q  74 tcttattttctaaaaattattcaagactgaagctcaaaagagttagaatgggataggcacaggca 138  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  37726570 tcttatttttgaaaaattatccaagactgaagctcaaaagagttagaatgagataggcacaggca 37726506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 37726463 - 37726426
Alignment:
Q  149 caagtaataatccctcagataagttttttactcataag 186  Q
    |||||||||||||||||||| |||||||||||||||||    
T  37726463 caagtaataatccctcagatgagttttttactcataag 37726426  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 19461908 - 19461805
Alignment:
Q  171 gttttttactcataagtggaaatggaaattgtctattctttttcagttagcaggcccagttatggctaataggaaaacatgactgacaaagtgcacaatg 270  Q
    |||||||| ||||||||||||||| || |  |||||| |||| |||||||||  |||| ||| || ||| | |||||||||||||||||| ||||||||     
T  19461908 gttttttattcataagtggaaatgcaactcttctattgttttgcagttagcatacccatttacgggtaaaaagaaaacatgactgacaaaatgcacaatc 19461809  T
Q  271 ttct 274  Q
    ||||    
T  19461808 ttct 19461805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 19559586 - 19559483
Alignment:
Q  171 gttttttactcataagtggaaatggaaattgtctattctttttcagttagcaggcccagttatggctaataggaaaacatgactgacaaagtgcacaatg 270  Q
    |||||||| ||||||||||||||| || |  |||||| |||| |||||||||  |||| ||| || ||| | |||||||||||||||||| ||||||||     
T  19559586 gttttttattcataagtggaaatgcaactcttctattgttttgcagttagcatacccatttacgggtaaaaagaaaacatgactgacaaaatgcacaatc 19559487  T
Q  271 ttct 274  Q
    ||||    
T  19559486 ttct 19559483  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 830 - 872
Target Start/End: Original strand, 46006445 - 46006487
Alignment:
Q  830 cctatgttcctataagttgtgtgctttaatattgttcctatga 872  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  46006445 cctatgttcctataatttatgtgctttaatattgttcctatga 46006487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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