View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_101 (Length: 328)
Name: NF1145_low_101
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 43238283 - 43238546
Alignment:
| Q |
1 |
tcaagcaaaaattggagaatnnnnnnnttatattattttataccaaaataaattgaagacacaccaatatttactaattatatttatacatatgttttca |
100 |
Q |
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| T |
43238283 |
tcaagcaaaaattggagaataaaaaaattatattattttataccaaaataaattgaagacacatcaatatttactaattatatttatacatatgttttca |
43238382 |
T |
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| Q |
101 |
tattttaaaatcatagcatgannnnnnnncatttcaaaactgtcacatacattttctctatatgtgagcaaataatcatccaatagtttatttctcataa |
200 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
43238383 |
tattttaaaatcatagtatgattttttt-catttcaaaactgtcacattcattttctctatatgtgagcaaataatcatccaacagtttatctctcataa |
43238481 |
T |
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| Q |
201 |
tgttacgcgtttatttattcataactcaaattcaatattctttgaaagggtaatttttcattttg |
265 |
Q |
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| T |
43238482 |
tgttacgcgtttatttattcataactcaaattcaatattctttaaaagggtaatttttcattttg |
43238546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 27428522 - 27428782
Alignment:
| Q |
5 |
gcaaaaattggagaatnnnnnnnttatattattttataccaaaataaattgaagacacaccaatatttactaattatatttatacatatgttttcatatt |
104 |
Q |
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|||||||||||||||| |||||| ||||| |||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||| |||||||| |
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| T |
27428522 |
gcaaaaattggagaatacaaaaattatatcattttgtaccaaaa--aattggagacacatcaatatctactaattatatttatatgtatgtcttcatatt |
27428619 |
T |
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| Q |
105 |
ttaaaatcatagcatgannnnnnnncatttcaaaactgtcacatacat---tttctctatatgtgagcaaataatcatccaatagtttatttctcataat |
201 |
Q |
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| T |
27428620 |
ttaaaattatagcatgatttttt--catttcaacactatcacatacatatttttctctatatgtgagcaaataatcatccaccaatttatctctcataat |
27428717 |
T |
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| Q |
202 |
gttacgcgtttatttattcataactcaaattcaata-ttctttgaaagggtaatttttcattttg |
265 |
Q |
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| T |
27428718 |
tttacgcgtttatttattcataaatccaattcaatatttttttgtgagggtaatttttcattttg |
27428782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 43238604 - 43238656
Alignment:
| Q |
265 |
gggcagctgccctctattgtttggccttagatccgtgcctgtgcctgattcat |
317 |
Q |
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| T |
43238604 |
gggcagctgccctcaattgtttggccttagatctgtgcctgtgcctgattcat |
43238656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 7339384 - 7339435
Alignment:
| Q |
28 |
ttatattattttataccaaaataaattgaagacacaccaatatttactaatta |
80 |
Q |
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|||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| |
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| T |
7339384 |
ttatatcattttatactcaaa-aaattgaagacacaccaatatctactaatta |
7339435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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