View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_105 (Length: 319)
Name: NF1145_low_105
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_105 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 50464096 - 50463985
Alignment:
| Q |
24 |
gttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacctaccagaccccatttccttgtcatattctttt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50464096 |
gttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacctaccagaccccatttccttgtcatattctttt |
50463997 |
T |
|
| Q |
124 |
gcttcatctcac |
135 |
Q |
| |
|
||||||| |||| |
|
|
| T |
50463996 |
gcttcatatcac |
50463985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University