View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_107 (Length: 314)
Name: NF1145_low_107
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 64 - 233
Target Start/End: Complemental strand, 5115925 - 5115757
Alignment:
| Q |
64 |
tgaattgatgatattgtagggccatcattatcaagaaaatgatatgtcttgttcctcttattgggcttgaaacaccaatactctatgacctatttatctt |
163 |
Q |
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| T |
5115925 |
tgaattgatgatattgtagggccatcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaatcctctatgacctatttatctt |
5115826 |
T |
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| Q |
164 |
tctacttgaaaattgagtcaacttaataatgtcttatgtattaaattgtaataattacttggagtttaaa |
233 |
Q |
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| T |
5115825 |
tctacttgaaaattgagtcaacttaataatg-cttatgtattaaattgtaataattactttgagtttaaa |
5115757 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 5112015 - 5111965
Alignment:
| Q |
251 |
tgataaatttaaatgtattattactgattgtggggtttttgctttgaccct |
301 |
Q |
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| T |
5112015 |
tgataaatttaaatgtattattactgattttggggtttttgctttgaccct |
5111965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 5115762 - 5115719
Alignment:
| Q |
258 |
tttaaatgtattattactgattgtggggtttttgctttgaccct |
301 |
Q |
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| T |
5115762 |
tttaaatgtattattactgattgtggggtttttgctttgaccct |
5115719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 9520999 - 9521087
Alignment:
| Q |
186 |
ttaataatgtcttatgtattaaattgtaataattacttggagtttaaacatgtt-gttggttgtgttgataaatttaaatgtattatta |
273 |
Q |
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| T |
9520999 |
ttaataattgcttatgtattaagttgtaatatttactttgtgtttaaacatgttactaggttgttttaacaaatttgaatgtattatta |
9521087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 40804391 - 40804337
Alignment:
| Q |
88 |
tcattatcaagaaaatgatatgtcttgttcctcttattgggcttgaaacaccaat |
142 |
Q |
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| T |
40804391 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
40804337 |
T |
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