View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_108 (Length: 314)
Name: NF1145_low_108
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_108 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 303
Target Start/End: Original strand, 16385639 - 16385906
Alignment:
| Q |
36 |
aataaataaataccttaacatggtccctcttttcttcaaattcacgagatcgaagaagttgttcatcctcacccaaagcagagnnnnnnnncttaggaca |
135 |
Q |
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| T |
16385639 |
aataaataaataccttaatttggtccctctcttcttcaaattcacgtgttcgaagaagatgttcatcctcacccaaagcagagaaaaaaaacttaggaca |
16385738 |
T |
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| Q |
136 |
ccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaattccaaaaagagtaataggagaacctccatca |
235 |
Q |
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| T |
16385739 |
ccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaataccaaaaagagtaacaggagaacctccatca |
16385838 |
T |
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| Q |
236 |
tcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcat |
303 |
Q |
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| T |
16385839 |
tcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcat |
16385906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 303
Target Start/End: Complemental strand, 12187 - 11927
Alignment:
| Q |
43 |
aaataccttaacatggtccctcttttcttcaaattcacgagatcgaagaagttgttcatcctcacccaaagcagagnnnnnnnncttaggacaccttgac |
142 |
Q |
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| T |
12187 |
aaataccttaatctggtccctctcttcttcaaattcacgaggtcgatgtagtcgttcattctcacccaaagcagagaagaaaaacttaggacaccttgac |
12088 |
T |
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| Q |
143 |
ttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaattccaaaaagagtaataggagaacctccatcatcagaaa |
242 |
Q |
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| T |
12087 |
ttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggggaacctccatcatcagaaa |
11988 |
T |
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| Q |
243 |
gataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcat |
303 |
Q |
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| T |
11987 |
gataaatagaaagtttattagaagggtagtccattgcaatagcagaaataacagtgttcat |
11927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 17588787 - 17589058
Alignment:
| Q |
29 |
aataacaaataaataaataccttaacatggtccctcttttcttcaaattcacgagatcgaagaagttgttcatcctcacccaaagcagagnnnnnnnnct |
128 |
Q |
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||||| || |||| ||||||||||| |||||||||| | ||||||||||| | | | |||| |||||||||||||||||||| ||| || |
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| T |
17588787 |
aataataattaaacaaataccttaatctggtccctctctgcttcaaattcatgtgttggaag---ttgttcatcctcacccaaaggtgagaaaaaaatct |
17588883 |
T |
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| Q |
129 |
taggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaattccaaaaagagtaataggagaacc |
228 |
Q |
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| T |
17588884 |
taggacaccttgacttaacaccatatttcttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaatcccaaatagagtaatggtagaacc |
17588983 |
T |
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| Q |
229 |
tccatcatcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcat |
303 |
Q |
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| T |
17588984 |
tccatcatcagaaagataaatagaaagtttatcaggagggtaatccatagcaatagcagaaacaacagtgttcat |
17589058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 127 - 303
Target Start/End: Complemental strand, 270494 - 270318
Alignment:
| Q |
127 |
cttaggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaattccaaaaagagtaataggagaa |
226 |
Q |
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|||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |||||||||||||||| |||| |
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| T |
270494 |
cttaggacaccttgactttacaccatattttttacaaaagggaacccatactttagcaaattgagtagcctctttaatcccaaaaagagtaatagcagaa |
270395 |
T |
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| Q |
227 |
cctccatcatcagaaagataaatagaaagtttattagaagggtaatccattgcaatagcagaaataacagtgttcat |
303 |
Q |
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| T |
270394 |
gcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcat |
270318 |
T |
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