View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_111 (Length: 312)
Name: NF1145_low_111
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_111 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 44 - 302
Target Start/End: Original strand, 20477893 - 20478151
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20477893 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
20477992 |
T |
|
| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20477993 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgt |
20478092 |
T |
|
| Q |
244 |
tcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtg |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478093 |
tcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtg |
20478151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 44 - 295
Target Start/End: Original strand, 38513374 - 38513625
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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||||||||||||||| || ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
38513374 |
agtcctatcgaaaagttgttcctttgtcatgagaaggttctcatttggaacatactgggcaaacccaagagccgatgttccgcgaggaacaatagttact |
38513473 |
T |
|
| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgt |
243 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||||||||||| || ||||| | | ||| ||||||||| ||| |
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| T |
38513474 |
ttcaacaatgggtcagtatgttccaagaaccaacctgcaacagcatgacctgcttcatggtaagcaacagtgcgtctttgcagcttacttattaccctgt |
38513573 |
T |
|
| Q |
244 |
tcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38513574 |
tcttcttctccaaaccaccaatgatcctatcaatagctgcctcgaaatgatc |
38513625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 29729044 - 29728792
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
| |
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||||||||| ||||| ||||| |||||||||||| ||| ||||||| |||| |||| |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
29729044 |
agtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgcgcaaacccaagagctgctgttccgcgaggaacaatagttact |
29728945 |
T |
|
| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgt |
243 |
Q |
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||||| |||||||| |||||||||||||||||||| ||||| ||||||| ||||| |||||||||| ||||| || |||| ||| ||||||||| || |
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| T |
29728944 |
ttcaataatggctcggtatgttccaagaaccaaccaacaacagcatggcctgcttcgtggtaagcaattgtacgcctttcctgcttacttattacccggt |
29728845 |
T |
|
| Q |
244 |
tcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcc |
296 |
Q |
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|||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
29728844 |
tcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatcc |
29728792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 44 - 303
Target Start/End: Complemental strand, 45285333 - 45285076
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| || ||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
45285333 |
agtcctatcaaaaagctgctc--ttgtcatgagatggttctcgtttggaacatactgcgcaaacccaagagctgctgttcctcgaggaacaatagttact |
45285236 |
T |
|
| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgt |
243 |
Q |
| |
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||||| ||||| | ||||||||||||||||||||| |||||| |||| || |||||||||||||||||||| || || | || ||||||||||||||||| |
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| T |
45285235 |
ttcaaaaatggattagtatgttccaagaaccaacctgcaacagcatgacctgcttcatggtaagcaacggttcgcctgtgctgcttgcttattaccttgt |
45285136 |
T |
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| Q |
244 |
tcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgg |
303 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
45285135 |
tcttcttctccaaaccaccgatgatcctatcaatagctgcctcaaaatgatcctttgtgg |
45285076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 16838519 - 16838267
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||| ||| ||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
16838519 |
agtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgttccgcgaggaacaatagttact |
16838420 |
T |
|
| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgt |
243 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||| || |||| ||| |||||||| || |
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| T |
16838419 |
ttcaataatggctcggtatgttccaagaaccaaccaacaacagcatggcctgcttcgtggtaagcaacggtacgcctttcctgcttacttattacacggt |
16838320 |
T |
|
| Q |
244 |
tcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcc |
296 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
16838319 |
tcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatcc |
16838267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 44 - 297
Target Start/End: Complemental strand, 3568 - 3314
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||| ||||||| | | |||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
3568 |
agtcctatcgaaaagttgctccttggtcatgagaaggttttcatttgacaaatactgggcaaacccaagagtttctgttccgcgaggaacaatagttact |
3469 |
T |
|
| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaa-cccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||| || |||| ||| ||||||||| || |
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|
| T |
3468 |
ttcaacaatggctcagtatgttccaagaaccaaccccacaacaacatggcctgcttcatggtaagcaatagtacgcctttcctgcttacttattaccatg |
3369 |
T |
|
| Q |
243 |
ttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcct |
297 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
3368 |
ttcttcttctctaaaccgccaatgaccctatcaatggctgcctcgaaatgatcct |
3314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 24005111 - 24004915
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||| ||| ||| |||||||| | |||||||||||||| || ||||| || ||||||||||| |||||| |
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| T |
24005111 |
agtcatatccaaaagctgctcctttgtcctgagaaggttctcacttggaacatattgggcaaacccaagtgctgctgtgccgcgaggaacaatggttact |
24005012 |
T |
|
| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattacct |
240 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||| || ||| ||| |||||||||| |
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|
| T |
24005011 |
ttcaacaatggctcacaatgttccaagaaccaacctgcaacagcatggcctgcttcatggtaagcaacagtacgcctttcccgcttacttattacct |
24004915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 24004449 - 24004389
Alignment:
| Q |
236 |
taccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcc |
296 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
24004449 |
taccctgttcttcttctccaaaccaccaatgatcctatcgatagctgcctcgaaatgatcc |
24004389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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