View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_112 (Length: 311)
Name: NF1145_low_112
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_112 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 37640596 - 37640484
Alignment:
| Q |
147 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaagcga |
246 |
Q |
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| T |
37640596 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagcagcaatgtctagaagcttccaagcga |
37640497 |
T |
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| Q |
247 |
tgggagagtgatg |
259 |
Q |
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| T |
37640496 |
tgggagagtgatg |
37640484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 37640654 - 37640626
Alignment:
| Q |
89 |
aagaagaaaaacctaattcgagtacattg |
117 |
Q |
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| T |
37640654 |
aagaagaaaaacctaattcgagtacattg |
37640626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 2156744 - 2156856
Alignment:
| Q |
147 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaagcga |
246 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2156744 |
gtaacggaaatgtggaagaacatagtggagagaagagcgatgaggagtaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaaacgg |
2156843 |
T |
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| Q |
247 |
tgggagagtgatg |
259 |
Q |
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||||||||||||| |
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| T |
2156844 |
tgggagagtgatg |
2156856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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