View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_114 (Length: 307)
Name: NF1145_low_114
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 35667827 - 35667549
Alignment:
| Q |
1 |
atgctatatccatgtacagaagcgatttagctnnnnnnnnnn-ctactctcatccttgaaatttatttatatatcaagtcatattatttttctataaagt |
99 |
Q |
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| T |
35667827 |
atgctatatccatgtacagaagcgatttagctaaaaaaaaaaactactctcatccttgaaatttatttatatatcaagtcatattatttttctataaagt |
35667728 |
T |
|
| Q |
100 |
ctaatgtatttgatacaaaatttagaccaaaaacattttacatttgaatatcaaaatagtgagcaacgatcctgatctgtaagaaaaattgtgtgtttta |
199 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
35667727 |
ctaatgtatttgatacaaaatttagaacaaaaatattttacatttgaatatcaaaatagtgagtaacgatcctgatctgtaagaaaaattgtgggtttta |
35667628 |
T |
|
| Q |
200 |
gtttgatttttaagagagagaaaaatgcacgactctttgcttgaacatgatcggttctataagctcgtacaattgtatc |
278 |
Q |
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| T |
35667627 |
gtttgatttttaagagagagaaaaatgcacgactctttgcttgaacatgatcggttctataagctcgtacaattgtatc |
35667549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 32052439 - 32052391
Alignment:
| Q |
95 |
aaagtctaatgtatttgatacaaaatttagaccaaaaacattttacattt |
144 |
Q |
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| T |
32052439 |
aaagtcaaatgtatttgat-ctaaatttagaccaaatacattttacattt |
32052391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 33653218 - 33653259
Alignment:
| Q |
96 |
aagtctaatgtatttgatacaaaatttagaccaaaaacattt |
137 |
Q |
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|||||||||||||||| | |||||||||||||||| |||||| |
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| T |
33653218 |
aagtctaatgtatttggtccaaaatttagaccaaacacattt |
33653259 |
T |
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