View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_115 (Length: 305)
Name: NF1145_low_115
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 27436385 - 27436183
Alignment:
| Q |
42 |
tctctgtcgaaagaataggtgcagcttttgcatgtctcggtaaccctactccttttaatcccaagatgctattatgaaactccctcggagtaagatcgga |
141 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27436385 |
tctcggtcgaaagaataggtgcagcttttgcatgtctcggtaaccctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcgga |
27436286 |
T |
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| Q |
142 |
gaatcttgtaacaccatgagttgctgaaggatccattatcccatgtcttttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttca |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27436285 |
gaatcttgtaacaccatgagttgctgaaggatccattatcccatgtctcttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttca |
27436186 |
T |
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| Q |
242 |
tct |
244 |
Q |
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||| |
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| T |
27436185 |
tct |
27436183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 49 - 244
Target Start/End: Complemental strand, 27944870 - 27944675
Alignment:
| Q |
49 |
cgaaagaataggtgcagcttttgcatgtctcggtaaccctactccttttaatcccaagatgctattatgaaactccctcggagtaagatcggagaatctt |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27944870 |
cgaaagaataggtgcagcttttgcatgtctcggtaaccctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcggagaatctt |
27944771 |
T |
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| Q |
149 |
gtaacaccatgagttgctgaaggatccattatcccatgtcttttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttcatct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27944770 |
gtaacaccatgagttgctgaaggatccattatcccatgtctcttagcacggtgaaggttagacttgaagacattgaacctataatcatgttcatct |
27944675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 27549858 - 27550053
Alignment:
| Q |
49 |
cgaaagaataggtgcagcttttgcatgtctcggtaaccctactccttttaatcccaagatgctattatgaaactccctcggagtaagatcggagaatctt |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27549858 |
cgaaagaataggtgcagcttttgcatgtctcggtaaccctactccttttaatcccaagatgctattacgaaactccctcggagtaagatcggagaatctt |
27549957 |
T |
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| Q |
149 |
gtaacaccatgagttgctgaaggatccattatcccatgtcttttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttcatct |
244 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549958 |
gtaacaccatgagttgccgaaggatccattatcacatgtctcttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttcatct |
27550053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 26765128 - 26764929
Alignment:
| Q |
44 |
tctgtcgaaagaataggtgcagcttttgcatgtctcggtaaccctactccttttaatcccaagatgctattatgaaactccctcggagtaagatcggaga |
143 |
Q |
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||||||| |||||| || || || || |||| | |||| ||||| || ||| | |||||||| | ||| ||| ||||||| ||||| ||||||||||||| |
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| T |
26765128 |
tctgtcggaagaatcggggctgcattagcatctttcggcaaccccacccctctcaatcccaaaacgctcttacgaaactctctcggggtaagatcggaga |
26765029 |
T |
|
| Q |
144 |
atcttgtaacaccatgagttgctgaaggatccattatcccatgtcttttagcacggtgaaggttagacttgaagacgttgaacctataatcatgttcatc |
243 |
Q |
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||||||||||||| ||| || ||||||||||| | ||| || |||||||||| || ||||||||||||| || ||||| |||||||||||||| |
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| T |
26765028 |
atcttgtaacaccgtgaaccgccgaaggatccatcaattgatgcctcttagcacggttcagattagacttgaagattttaaacctgtaatcatgttcatc |
26764929 |
T |
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