View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_117 (Length: 300)
Name: NF1145_low_117
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_117 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 74 - 300
Target Start/End: Original strand, 43552966 - 43553192
Alignment:
| Q |
74 |
ctaccaaccattgatttgcctctcattggtccttcttggtacacaccaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacagcca |
173 |
Q |
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| T |
43552966 |
ctaccaaccattgatttgcctctcattggtccttcttggtacacaccaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacagcca |
43553065 |
T |
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| Q |
174 |
ctaatacaatggtgtttcttgcatttagtaatgcctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgtt |
273 |
Q |
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| T |
43553066 |
ctaacacaatagtgtttcttgcatttagtaatgcctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgtt |
43553165 |
T |
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| Q |
274 |
atgatgatgcttttgtttcactaaatt |
300 |
Q |
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| T |
43553166 |
atgatgatgcttttgtttcactaaatt |
43553192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 76 - 300
Target Start/End: Original strand, 43548970 - 43549194
Alignment:
| Q |
76 |
accaaccattgatttgcctctcattggtccttcttggtacacaccaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacagccact |
175 |
Q |
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|||| |||||||| | ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
43548970 |
accagccattgatatacctttcttcggtccttcttggtacacaccaccaggtggactaataccagcagcaaaagttacagtagcaattaaaacagccact |
43549069 |
T |
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| Q |
176 |
aatacaatggtgtttcttgcatttagtaatgcctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgttat |
275 |
Q |
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| T |
43549070 |
aacacaatagtgtttcttgcatttagtaatgcctctttgtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgttat |
43549169 |
T |
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| Q |
276 |
gatgatgcttttgtttcactaaatt |
300 |
Q |
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| T |
43549170 |
gatggtgcttttgtttcactaaatt |
43549194 |
T |
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