View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_121 (Length: 298)

Name: NF1145_low_121
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_121
NF1145_low_121
[»] chr2 (5 HSPs)
chr2 (28-298)||(14163863-14164135)
chr2 (190-293)||(2176943-2177046)
chr2 (104-187)||(79356-79441)
chr2 (104-187)||(44939811-44939896)
chr2 (80-165)||(6469071-6469158)
[»] chr3 (10 HSPs)
chr3 (48-296)||(37835721-37835970)
chr3 (47-185)||(33980601-33980740)
chr3 (47-184)||(15372298-15372437)
chr3 (103-186)||(40969796-40969881)
chr3 (48-181)||(19653175-19653310)
chr3 (61-185)||(25617520-25617646)
chr3 (229-296)||(25617694-25617760)
chr3 (104-186)||(53050540-53050624)
chr3 (229-296)||(14609019-14609084)
chr3 (228-296)||(25449455-25449523)
[»] chr6 (5 HSPs)
chr6 (47-185)||(17714012-17714152)
chr6 (48-185)||(33754589-33754728)
chr6 (104-187)||(26710814-26710899)
chr6 (104-187)||(3490314-3490399)
chr6 (104-187)||(31933831-31933916)
[»] chr1 (7 HSPs)
chr1 (47-185)||(31458838-31458978)
chr1 (47-185)||(51128502-51128642)
chr1 (48-185)||(36193216-36193355)
chr1 (47-185)||(32641454-32641594)
chr1 (98-185)||(35368399-35368488)
chr1 (229-286)||(6333232-6333289)
chr1 (252-296)||(13383464-13383507)
[»] chr5 (4 HSPs)
chr5 (47-185)||(10468809-10468949)
chr5 (47-185)||(28639173-28639313)
chr5 (48-185)||(26501413-26501553)
chr5 (252-296)||(42073187-42073230)
[»] chr8 (6 HSPs)
chr8 (104-187)||(41692234-41692319)
chr8 (47-185)||(38891782-38891922)
chr8 (104-187)||(24732721-24732806)
chr8 (251-296)||(17859202-17859246)
chr8 (229-281)||(1828702-1828754)
chr8 (229-281)||(1863147-1863199)
[»] chr4 (8 HSPs)
chr4 (48-185)||(10009607-10009746)
chr4 (47-185)||(7446343-7446484)
chr4 (103-186)||(19836717-19836802)
chr4 (98-185)||(26017663-26017752)
chr4 (50-195)||(25459444-25459591)
chr4 (229-287)||(38654591-38654649)
chr4 (106-165)||(38948353-38948414)
chr4 (115-196)||(8933217-8933298)
[»] scaffold0394 (1 HSPs)
scaffold0394 (47-187)||(5204-5346)
[»] chr7 (1 HSPs)
chr7 (104-187)||(39295847-39295932)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 14164135 - 14163863
Alignment:
Q  28 gaaccatagattgtttaccaacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt-- 125  Q
    |||||||| |||||||||||||||| ||| |||||| ||||| |||||||||||| |||||||||  ||  |||||||||||||||||||||||||||      
T  14164135 gaaccatatattgtttaccaacaaaaccattacgactgtgcaattagtggagaagatgaagatgtattcttttcggtggttgaaagcaaaaaatgtgtgc 14164036  T
Q  126 tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatgattatttttaatttataacattactcttaaggactact 225  Q
    |||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| || | |||||||| |||||||||||||||||| ||||||  |    
T  14164035 tttccctttggttatcatatgtggtggcagaatccccttgcatgtttggggattggccgaagtttatttttcatttataacattactcttcaggactttt 14163936  T
Q  226 taatgtaattttgttttacttctctttgcactccttgtgctatggagcaaaactttttgtttgttaatataat 298  Q
    | |||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  14163935 tgatgtaactttgttttgcttctctttgcactcattgtgctagggagcaaaactttttatttgttaatataat 14163863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 2177046 - 2176943
Alignment:
Q  190 tatttttaatttataacattactcttaaggactacttaatgtaattttgttttacttctctttgcactccttgtgctatggagcaaaactttttgtttgt 289  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  2177046 tatttttaatttataacattactcttcaggactacttaatgtaattttgttttgcttctctttgcactccttgtgctatggagcaaaacttcttgtttgt 2176947  T
Q  290 taat 293  Q
    ||||    
T  2176946 taat 2176943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 79441 - 79356
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||| ||||||||||||||||  ||||| |||||| || || |||||||||||  ||||||||  ||||| ||||| ||||||||    
T  79441 tggttaaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggattggctgatg 79356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 44939896 - 44939811
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||||||||||||||||||||  ||||| |||| | || || ||||||||||| |||||||||   |||| ||||| ||||||||    
T  44939896 tggttgaaagcaaaaaatgtgtgctttccttttgattatcatttgtggtggcagcatccccttgctggtttagggattggctgatg 44939811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 6469158 - 6469071
Alignment:
Q  80 aaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttg 165  Q
    ||||| |||||||  || ||||| ||||||||||| ||||||||||  ||||| |||||| || || | ||||||||| |||||||||    
T  6469158 aaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccccttg 6469071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 296
Target Start/End: Original strand, 37835721 - 37835970
Alignment:
Q  48 acaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagc--aaaaaatgtgttttccctttggtcattatat 145  Q
    ||||||||||||||||||||||  || || | ||||| |||||||  || ||| |||||||||||||  |||| || |||||||  ||||||||| ||||    
T  37835721 acaaagccaatacgacggtgcaactattgaaaaaggttaagatgtattctcttgggtggttgaaagctaaaaatatatgttttctttttggtcatcatat 37835820  T
Q  146 gtggtggcagaatccccttgaatgtttggggataggctgatg-attatttttaatttataacattactcttaaggactacttaatgtaattttgttttac 244  Q
    |||||||||  |||||||||  ||||||| ||| | ||||||  |||||||| ||||||| |   ||| || ||||||  || |||||| |||||||| |    
T  37835821 gtggtggcaacatccccttgtttgtttggagattgactgatgttttatttttcatttatagccacactattcaggactgtttgatgtaactttgttttgc 37835920  T
Q  245 ttctctttgcactccttgtgctatggagcaaaactttttgtttgttaatata 296  Q
    |||| || ||||||||||||||| ||||||||||| ||| ||||||||||||    
T  37835921 ttct-ttagcactccttgtgctagggagcaaaactattt-tttgttaatata 37835970  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 33980740 - 33980601
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt-tttccctttggtcattatat 145  Q
    |||||||||||||||| ||||||| |  |||| ||||| |||||||  || ||||| ||||||||||| ||||||||||  || ||||| || || || |    
T  33980740 aacaaagccaatacgatggtgcagcttttggaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttgttatcattt 33980641  T
Q  146 gtggtggcagaatccccttgaatgtttggggataggctga 185  Q
     ||||||||| |||||||||  ||||| ||||||||||||    
T  33980640 atggtggcagcatccccttgtttgtttagggataggctga 33980601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 15372298 - 15372437
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    ||||||| |||||||||||||||| |  |||| ||||| |||||||  || ||||  ||||||||||| ||||||||||  ||||| |||||| || ||     
T  15372298 aacaaagtcaatacgacggtgcagcttttggaaaaggttaagatgtattctcttcattggttgaaagctaaaaatgtgtgctttccttttggttatcatt 15372397  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctg 184  Q
    | ||||||||| ||||| |||  ||||| |||||||||||    
T  15372398 tatggtggcagcatccctttgtttgtttagggataggctg 15372437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 40969881 - 40969796
Alignment:
Q  103 gtggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgat 186  Q
    |||||||||||||||||||||||  ||||| |||||| || |||||||||||||   |||| |||  ||||||||||| |||||||    
T  40969881 gtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtggtggcaacgtccctttgcttgtttggggattggctgat 40969796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 19653175 - 19653310
Alignment:
Q  48 acaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatat 145  Q
    ||||||||||||||| ||||||| |  | || ||||| ||| |||  || ||||  ||||||||||| ||||||||||  ||||| |||||| || || |    
T  19653175 acaaagccaatacgatggtgcagcttttagaaaaggttaagttgtattctcttcattggttgaaagctaaaaatgtgtgctttccttttggttatcattt 19653274  T
Q  146 gtggtggcagaatccccttgaatgtttggggatagg 181  Q
     |||||||| ||||||||||  ||||| ||||||||    
T  19653275 atggtggcaaaatccccttgcttgtttagggatagg 19653310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 25617520 - 25617646
Alignment:
Q  61 gacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaat 158  Q
    |||||||||| |  |||| ||||| |||||||  || ||||| ||||||||||| ||||||||||  ||| | |||||| || || | ||||||||| ||    
T  25617520 gacggtgcagcttttggaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgcttttcttttggttatcatttatggtggcagcat 25617619  T
Q  159 ccccttgaatgtttggggataggctga 185  Q
    ||| |||  ||||| ||||||||||||    
T  25617620 ccctttgtttgtttagggataggctga 25617646  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 25617694 - 25617760
Alignment:
Q  229 tgtaattttgttttacttctctttgcactccttgtgctatggagcaaaactttttgtttgttaatata 296  Q
    ||||| |||||||| |||||   |||||||||||||||| ||||||| |||||||| |||||||||||    
T  25617694 tgtaactttgttttgcttcttaatgcactccttgtgctagggagcaagactttttg-ttgttaatata 25617760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 53050624 - 53050540
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgat 186  Q
    ||||||||||||||||||||||  ||| | |||||| || |||| ||||||||  ||||| |||  ||||||||||| |||||||    
T  53050624 tggttgaaagcaaaaaatgtgtgtttttcatttggttatcatatatggtggcaacatccctttgcttgtttggggattggctgat 53050540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 14609019 - 14609084
Alignment:
Q  229 tgtaattttgttttacttctctttgcactccttgtgctatggagcaaaactttttgtttgttaatata 296  Q
    |||||||||||| | ||||| | ||| ||||||||||||||||||| |  ||||| ||||||||||||    
T  14609019 tgtaattttgttctgcttctttatgccctccttgtgctatggagcaga--tttttttttgttaatata 14609084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 25449523 - 25449455
Alignment:
Q  228 atgtaattttgttttacttctctttgcactccttgtgctatggagcaaaactttttgtttgttaatata 296  Q
    |||||| |||||||| ||||| |   |||||||||||||| ||||||||||| |||  |||||||||||    
T  25449523 atgtaactttgttttgcttctttagacactccttgtgctagggagcaaaactattttattgttaatata 25449455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 17714012 - 17714152
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    |||||||||||||||| ||||||| |  |||| ||||| ||| ||| ||| ||||||||||||||||| ||||||||||  ||||| |||||| || ||     
T  17714012 aacaaagccaatacgatggtgcagcttttggaaaaggttaagttgtactctcttcggtggttgaaagctaaaaatgtgtgctttccttttggttatcatt 17714111  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    | ||||||||| ||||||| || |||||  |||||||||||    
T  17714112 tatggtggcagcatcccctagattgtttaaggataggctga 17714152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 33754589 - 33754728
Alignment:
Q  48 acaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatat 145  Q
    ||||||||||||||| ||||||| |  | || ||||| ||| |||  || ||||| ||||||||||| ||||||||||  ||||| |||||| || || |    
T  33754589 acaaagccaatacgatggtgcagcttttagaaaaggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcattt 33754688  T
Q  146 gtggtggcagaatccccttgaatgtttggggataggctga 185  Q
     |||||||| ||||||||||  ||||| ||||||||||||    
T  33754689 atggtggcaaaatccccttgcttgtttagggataggctga 33754728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 26710899 - 26710814
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||||||||||||||||||||  ||||| |||||| || || |||||||||||  ||||||||  ||||| ||||| ||||||||    
T  26710899 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggattggctgatg 26710814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 3490314 - 3490399
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||||||||||||||||||||  ||||| |||||| |  ||||||||||||||  |||||||   ||||||||||| | ||||||    
T  3490314 tggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttacttgtttggggattgactgatg 3490399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 31933916 - 31933831
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||||||||||||||||||||  ||||| |||||| |  ||||||||||||||  |||||||   ||||||||||| | ||||||    
T  31933916 tggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttacttgtttggggattgactgatg 31933831  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 31458978 - 31458838
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    |||||||||||||||| ||||||| |  |||| ||||| |||||||  || ||||| ||||||||||| ||||||||||  ||||| |||||| || ||     
T  31458978 aacaaagccaatacgatggtgcagcttttggaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcatt 31458879  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    | ||||||||| |||||||||  ||||| ||||||||||||    
T  31458878 tatggtggcagcatccccttgtttgtttagggataggctga 31458838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 51128642 - 51128502
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    ||||||||||||||||||||||||||  |||| ||||| |||||||  || ||||| ||||||||| | ||||||||||  ||| | |||||| || ||     
T  51128642 aacaaagccaatacgacggtgcagtttttggaaaaggttaagatgtattctcttcgttggttgaaaactaaaaatgtgtgcttttcttttggttatcatt 51128543  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    | ||||||||| ||||| |||  ||||| ||||||||||||    
T  51128542 tatggtggcagcatccctttgtttgtttagggataggctga 51128502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 36193216 - 36193355
Alignment:
Q  48 acaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatat 145  Q
    ||||||||||||||  ||||||  |  |||| ||||| ||| ||||||| ||||| ||||||||||| ||||||||||  ||| | |||||| || || |    
T  36193216 acaaagccaatacggtggtgcaactcttggaaaaggttaagttgttctctcttcgttggttgaaagctaaaaatgtgtgcttttcttttggttatcattt 36193315  T
Q  146 gtggtggcagaatccccttgaatgtttggggataggctga 185  Q
     ||||||||| |||||||||  ||||| ||||||||||||    
T  36193316 atggtggcagcatccccttgtttgtttagggataggctga 36193355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 32641594 - 32641454
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    |||||||||||  ||| | ||||| |  |||| ||||| ||||||| ||| ||||| ||||||||||| ||||||||||  ||||| |||||| || ||     
T  32641594 aacaaagccaactcgatgatgcagcttttggaaaaggttaagatgtactctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcatt 32641495  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    | ||||||||| ||||||||   ||||| ||||||||||||    
T  32641494 tatggtggcagcatccccttctgtgtttagggataggctga 32641454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 35368399 - 35368488
Alignment:
Q  98 cttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    ||||| ||||||||||| ||||||||||  ||||| |||||| || || | ||||||||| |||||||||  ||||| ||||||||||||    
T  35368399 cttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 35368488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 6333232 - 6333289
Alignment:
Q  229 tgtaattttgttttacttctctttgcactccttgtgctatggagcaaaactttttgtt 286  Q
    ||||||||||||||   ||| || ||||||||||||||| ||| ||||||||||||||    
T  6333232 tgtaattttgttttgtctcttttggcactccttgtgctagggatcaaaactttttgtt 6333289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 13383507 - 13383464
Alignment:
Q  252 tgcactccttgtgctatggagcaaaactttttgtttgttaatata 296  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||    
T  13383507 tgcactccttatgctagggagcaaaactttttg-ttgttaatata 13383464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 10468949 - 10468809
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    |||||||||||||||||||||||| |  |||| ||||| ||| |||  || ||||| ||||||||||| ||||||||||  ||||| |||||| || ||     
T  10468949 aacaaagccaatacgacggtgcagcttttggaaaaggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcatt 10468850  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    | |||||| || |||||||||  ||||| ||||||||||||    
T  10468849 tatggtggaagcatccccttgtttgtttagggataggctga 10468809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 28639173 - 28639313
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    |||||||||||||||||| ||||| |  |||| ||||| || ||||  || ||||| ||||||||||| ||||||||||  ||||| |||||| || ||     
T  28639173 aacaaagccaatacgacgatgcagcttttggaaaaggttaaaatgtattctcttcgttggttgaaagccaaaaatgtgtgctttccttttggttatcatt 28639272  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    | ||||||||| |||||||||  ||||| ||||||||||||    
T  28639273 tatggtggcagcatccccttgtttgtttagggataggctga 28639313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 26501553 - 26501413
Alignment:
Q  48 acaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatat 145  Q
    ||||||||||||||  ||||||| |  |||| ||||| ||| |||  || ||||| ||||||||||| ||||||||||  | ||| |||||| || || |    
T  26501553 acaaagccaatacggtggtgcagctcttggaaaaggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgctctccttttggttatcattt 26501454  T
Q  146 gtggtggcagaat-ccccttgaatgtttggggataggctga 185  Q
     ||||||||| || |||||||  ||||| ||||||||||||    
T  26501453 atggtggcagcatcccccttgtttgtttagggataggctga 26501413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 42073230 - 42073187
Alignment:
Q  252 tgcactccttgtgctatggagcaaaactttttgtttgttaatata 296  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||    
T  42073230 tgcactccttgtgctagagagcaaaactttttgttt-ttaatata 42073187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 41692234 - 41692319
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||||||||||||||||||||  ||||| | |||| || ||||||||||||||  ||||||||| ||||||||||| ||||||||    
T  41692234 tggttgaaagcaaaaaatgtgtgctttccttatggttatcatatgtggtggcagcgtccccttgactgtttggggattggctgatg 41692319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 38891782 - 38891922
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattata 144  Q
    |||||||||||||||||||||||  |  |||| ||||| |||||||  || ||||| ||||||||||| ||||||||||  |||||  ||||| || ||     
T  38891782 aacaaagccaatacgacggtgcaacttttggaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttcctcttggttatcatt 38891881  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    | |||| |||| |||||||||  ||||| ||||||||||||    
T  38891882 tatggtagcagcatccccttgtttgtttagggataggctga 38891922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 24732806 - 24732721
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||||||||||||||||||||  ||||| |||||| |  ||||||||||||||  ||||||||  ||||||| ||| ||||||||    
T  24732806 tggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttgcttgtttggagattggctgatg 24732721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 17859202 - 17859246
Alignment:
Q  251 ttgcactccttgtgctatggagcaaaactttttgtttgttaatata 296  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||    
T  17859202 ttgcactccttgtgctagggagcaagactttttg-ttgttaatata 17859246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 1828702 - 1828754
Alignment:
Q  229 tgtaattttgttttacttctctttgcactccttgtgctatggagcaaaacttt 281  Q
    ||||||||||||||   ||| |||||||||||| ||||| |||||||||||||    
T  1828702 tgtaattttgttttgtctctttttgcactccttatgctagggagcaaaacttt 1828754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 1863147 - 1863199
Alignment:
Q  229 tgtaattttgttttacttctctttgcactccttgtgctatggagcaaaacttt 281  Q
    ||||||||||||||   ||| |||||||||||| ||||| |||||||||||||    
T  1863147 tgtaattttgttttgtctctttttgcactccttatgctagggagcaaaacttt 1863199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 10009607 - 10009746
Alignment:
Q  48 acaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatat 145  Q
    ||||||||||||||  ||||||| |   ||| ||||| ||| |||  || ||||| ||||||||||| ||||||||||  ||||| |||||| || || |    
T  10009607 acaaagccaatacggtggtgcagctctaggaaaaggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgttttccttttggttatcattt 10009706  T
Q  146 gtggtggcagaatccccttgaatgtttggggataggctga 185  Q
     ||||||||| |||||||||  ||||| ||||||||||||    
T  10009707 atggtggcagcatccccttgtttgtttagggataggctga 10009746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 7446484 - 7446343
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaa-gatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattat 143  Q
    |||||||||||||||| ||||||| |  |||| || || || |||||  || ||||| ||||||||||| |||||| |||  ||||| |||||| || ||    
T  7446484 aacaaagccaatacgatggtgcagcttttggaaaatgttaaagatgtattctcttcgttggttgaaagctaaaaatatgtgctttccttttggttatcat 7446385  T
Q  144 atgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
     | ||||||||| |||||||||  ||||| ||||||||||||    
T  7446384 ttatggtggcagcatccccttgtttgtttagggataggctga 7446343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 19836802 - 19836717
Alignment:
Q  103 gtggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgat 186  Q
    |||||||||||||||||||||||  ||||| |||||| || |||||||||||||   |||| |||  ||||||||||| |||||||    
T  19836802 gtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtggtggcaacgtccctttgcttgtttggggattggctgat 19836717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 26017663 - 26017752
Alignment:
Q  98 cttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctga 185  Q
    ||||| ||||||||||| ||||||||||  ||||| |||||| || || | ||||||||| |||||||||  ||||| ||||||||||||    
T  26017663 cttcgttggttgaaagccaaaaatgtgtgttttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 26017752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 25459444 - 25459591
Alignment:
Q  50 aaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgt 147  Q
    |||| ||| ||||| |||||  || |||| ||||||||||| |  || ||||| |||||||||||  ||||||| |  ||||| |||| | || ||||||    
T  25459444 aaagtcaacacgaccgtgcatctattggaaaaggtgaagatatattctcttcgatggttgaaagcttaaaatgtatgctttccttttgattatcatatgt 25459543  T
Q  148 ggtggcagaatccccttgaatgtttggggataggctgatgattatttt 195  Q
    |||||||||| |||||||  ||||||||||| |  ||||| |||||||    
T  25459544 ggtggcagaacccccttgcttgtttggggattgagtgatgtttatttt 25459591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 38654649 - 38654591
Alignment:
Q  229 tgtaattttgttttacttctctttgcactccttgtgctatggagcaaaactttttgttt 287  Q
    ||||| |||||||| |||||   ||||||||||||||||  ||||||||||||||||||    
T  38654649 tgtaactttgttttgcttcttaatgcactccttgtgctagagagcaaaactttttgttt 38654591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 38948353 - 38948414
Alignment:
Q  106 gttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttg 165  Q
    ||||||||||||||||||||  ||||| |||||| || || ||||||||||| |||||||||    
T  38948353 gttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcatccccttg 38948414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 8933217 - 8933298
Alignment:
Q  115 aaaaaatgtgttttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatgattattttt 196  Q
    |||| ||||| ||||| |||||| || |||||||||||||| ||||||||   ||||||||||| || ||||| || |||||    
T  8933217 aaaatatgtgctttccttttggttatcatatgtggtggcagcatccccttatttgtttggggattggttgatgttttttttt 8933298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 5204 - 5346
Alignment:
Q  47 aacaaagccaatacgacggtgcagttagtggagaaggtgaagatgttctcacttcggtggttgaaagcaaaaaatg--tgttttccctttggtcattata 144  Q
    ||||||| ||||||||||||||||||| | || || || |||||||  || ||||| ||||||||||| |||||||  |||||||| |||||| || ||     
T  5204 aacaaagacaatacgacggtgcagttattcgaaaaagttaagatgtgttctcttcgttggttgaaagctaaaaatgtatgttttccttttggttatcatt 5303  T
Q  145 tgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    | ||||  ||| ||||| |||  ||||||||||| | ||||||    
T  5304 tatggtaacagcatccctttgtttgtttggggattgactgatg 5346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 39295847 - 39295932
Alignment:
Q  104 tggttgaaagcaaaaaatgtgt--tttccctttggtcattatatgtggtggcagaatccccttgaatgtttggggataggctgatg 187  Q
    ||||||||| ||||||||||||  ||| | |||||| ||||||||||||||||| ||||||||   ||||||||||| | ||||||    
T  39295847 tggttgaaaacaaaaaatgtgtgcttttcatttggttattatatgtggtggcagcatccccttatttgtttggggattgactgatg 39295932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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