View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_122 (Length: 295)
Name: NF1145_low_122
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_122 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 34662191 - 34661910
Alignment:
| Q |
1 |
aaggaagtttttgaagccggatgatccttcctttgtgctctcttctatttgctccttttctatatttttctcttatctatgaggtctatcgagaattatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34662191 |
aaggaagtttttgaagccggatgatccttcctttgtgctctcttctatttgctccttttctatatttttctcttatctatgaggtctatcgagaattatt |
34662092 |
T |
|
| Q |
101 |
ttgtatgatatagaggctataaattcggactactcaccctttatatcccaccaactaagcttaatagtgatggacgtgagggagtgtattgnnnnnnnct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34662091 |
ttgtatgatatagaggctataaattcggactactcaccctttatatcccaccaactaagcttaatagtgatggacgtgagggagtgtattgaaaaaaact |
34661992 |
T |
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| Q |
201 |
aagtatcatcctaaaactatattaggtcttccatattttaattttcaaatacctcttgaaggttttggttaaatgtccccct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34661991 |
aagtatcatcctaaaactatattaggtcttccatattttaattttcaaatacctcttgaaggttttggttaaatgtccccct |
34661910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 26881848 - 26881678
Alignment:
| Q |
19 |
ggatgatccttcctttgtgctctcttctatttgctccttttctatatttttctcttatctatgaggtctatcgagaattattttgtatgatat-agaggc |
117 |
Q |
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|||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||| || | |||| |||||| ||||||||| |||| | |
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| T |
26881848 |
ggatgatccttcctttgtgctctcttatattagctcattttctatatttttctctcatctataagttttatcagaaattatc--gtatgatatcagagtc |
26881751 |
T |
|
| Q |
118 |
tataaattcggactactcaccctttatatcccaccaactaagcttaatagtgatggacgtgagggagtgtattg |
191 |
Q |
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| T |
26881750 |
tataaattcggacaacccaccctttatatcc-accaactaagcttaatagcgatggacgtcagagagtgtattg |
26881678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 26866202 - 26866133
Alignment:
| Q |
211 |
ctaaaactatattaggtcttccatattttaattttcaaatacctcttgaaggttttggttaaatgtcccc |
280 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |
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| T |
26866202 |
ctaaaaatatattaggtcttccatattttaattttctaataccacttgagggttttggttaaatgtcccc |
26866133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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