View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_134 (Length: 278)
Name: NF1145_low_134
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_134 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 25945184 - 25945416
Alignment:
| Q |
17 |
tttggtgttttgaattttcagtttattcttctagcctttagaggaaggatgaacgacgatgctctctacggggtttttgccgattcgtcttgtcgaaaac |
116 |
Q |
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| T |
25945184 |
tttggtgttttgaattttcattttattcttctagcctttagaggaagaatgaatgacgatgctctctacggggtttttgccgattcgtcttgtggaaaac |
25945283 |
T |
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| Q |
117 |
ggagaaaacacgacgattcctcgaggatacaagacctcactaaaccggtgaattttgtttcaaccggacttttcatgcctaatgacgataaatttgatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
25945284 |
ggagaaaacacgacgattcctcgaggatacaagacctcactaaaccggtgaattttgtttcaaccggaactttcatgcctaatgaggataaatttgatga |
25945383 |
T |
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| Q |
217 |
caataagcaggagcagagtataggtcacgagga |
249 |
Q |
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| T |
25945384 |
caataagcaggagcagagtctaggtcacgagga |
25945416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 25951882 - 25952011
Alignment:
| Q |
119 |
agaaaacacgacgattcctcgaggatacaagacctcactaaaccggtgaattttgtttcaaccggacttttcatgcctaatgacgataaatttgatgaca |
218 |
Q |
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||||||||| |||||||| || || ||| ||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||| |||||||| |
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| T |
25951882 |
agaaaacacagcgattccttgaagaaacaggaccttactaaaccggtaaattttgtttccaccggaattttcatgcctaatgaggataaatatgatgaca |
25951981 |
T |
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| Q |
219 |
ataagcaggagcagagtataggtcacgagg |
248 |
Q |
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|||| ||||||||| || ||||||| |||| |
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| T |
25951982 |
ataaacaggagcagggtctaggtcaggagg |
25952011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 25951729 - 25951845
Alignment:
| Q |
119 |
agaaaacacgacgattcctcgaggatacaagacctcactaaaccggtgaattttgtttcaaccggacttttcatgcctaatgacgataaatttgatgaca |
218 |
Q |
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||||||||| ||||||||||| || ||||||||| ||||||| || ||||| ||||| |||||| ||||||||||||||| |||||||||||||||| |
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| T |
25951729 |
agaaaacacagcgattcctcgaagaaacaagaccttactaaacatgtaaatttcgtttctaccggaactttcatgcctaatgaggataaatttgatgaca |
25951828 |
T |
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| Q |
219 |
ataagcaggagcagagt |
235 |
Q |
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||||||||||||||||| |
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| T |
25951829 |
ataagcaggagcagagt |
25951845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 25951576 - 25951689
Alignment:
| Q |
119 |
agaaaacacgacgattcctcgaggatacaagacctcactaaaccggtgaattttgtttcaaccggacttttcatgcctaatgacgataaatttgatgaca |
218 |
Q |
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||||||||| ||||||||||| || ||||||||| ||||||| || ||||| ||||| |||||| ||||||||||||||| |||||||||||||||| |
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| T |
25951576 |
agaaaacacagcgattcctcgaagaaacaagaccttactaaacatgtaaatttcgtttctaccggaactttcatgcctaatgaggataaatttgatgaca |
25951675 |
T |
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| Q |
219 |
ataagcaggagcag |
232 |
Q |
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|||||||||||||| |
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| T |
25951676 |
ataagcaggagcag |
25951689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 25951387 - 25951536
Alignment:
| Q |
92 |
tttgccgattcgtcttgtcgaaaacggagaaaacacgacgattcctcgaggatacaagacctcactaaaccggtgaattttgt---------ttcaaccg |
182 |
Q |
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||||| |||||||||||| |||| || ||||||||| | ||||||||| || ||||||||| ||| ||||||| ||||| || ||| |||| |
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| T |
25951387 |
tttgcagattcgtcttgtagaaagcgaagaaaacacagccattcctcgaagaaacaagaccttactgaaccggtaaatttggtaaatttcgtttctaccg |
25951486 |
T |
|
| Q |
183 |
gacttttcatgcctaatgacgataaatttgatgacaataagcaggagcag |
232 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25951487 |
gaactttcatgcctaatgaggataaatttgatgacaataagcaggagcag |
25951536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Original strand, 25951311 - 25951342
Alignment:
| Q |
27 |
tgaattttcagtttattcttctagcctttaga |
58 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25951311 |
tgaattttcagtttattcttctagcctttaga |
25951342 |
T |
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