View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_14 (Length: 627)
Name: NF1145_low_14
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 54 - 627
Target Start/End: Complemental strand, 37896784 - 37896211
Alignment:
| Q |
54 |
taggttcctttcactggaaatatcttattttaggcgtgccgggccctaaatttggatacctctcttgcctcggatttgaacctagatttgccacattatt |
153 |
Q |
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|||||||||| ||||||||||||| ||||| ||||||| ||||| |||||| ||||||||||||| | |||||||||||||||||||||| ||||||||| |
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| T |
37896784 |
taggttccttccactggaaatatcctatttgaggcgtgacgggcactaaatgtggatacctctctcggctcggatttgaacctagatttgtcacattatt |
37896685 |
T |
|
| Q |
154 |
ggagtatagcctcttcagctaaacccaagattgacacattgaaatttctattgataagaagtaggaaagtaaataactgagtaattggatgtgtattttg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896684 |
ggagtatagcctcttcagctaaacccaagattgacacgttgaaatttctattgataagaagtaggaaagtaaataactgagtaattggatgtgtattttg |
37896585 |
T |
|
| Q |
254 |
gagatacatacataatcatatttcatccaagcaacaattggcttgaaggaagttgagtttttgtgattttagccaagcagtaatagttctcctcaaccat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
37896584 |
gagatacatacataatcatatttcatccaagcaacaattggcttgaaggaagttgagtttttgtgatttcagccaagcagtaatagttctcttcaaccat |
37896485 |
T |
|
| Q |
354 |
aacatttgttagtagcataaattacaaaaatctaatcagttacactgattagcacagaagttcagctaaaaggttatagaaaatgataaaagatgctgaa |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896484 |
aacatttgttagtagcataaattacaaaaatctaatcagttacactgattagcacagaagttcagctaaaaggttatagaaaatgataaaagatgctgaa |
37896385 |
T |
|
| Q |
454 |
aatatattccatgtagcagtaatatagttatgccatgaacaggcattaaatcaagcttttcttgttgtatgaattccaaaactgatatgattctttacaa |
553 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896384 |
aatatattccatgtagcagtaatatagttatgccatgaacaggcattaaatcaagcttttcttgttgtatgaattccaaaactgatatgattctttacaa |
37896285 |
T |
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| Q |
554 |
taaaggggatatgaagaatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaattta |
627 |
Q |
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| T |
37896284 |
taaaggggatatgaagaatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaattta |
37896211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 626
Target Start/End: Complemental strand, 37898556 - 37898462
Alignment:
| Q |
532 |
aaactgatatgattctttacaataaaggggatatgaagaatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaattt |
626 |
Q |
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| T |
37898556 |
aaactgatatcattccttgtagtaaaggggacatgaagaagagtagttcatttgaactaagccatcaatcttgaacaaacccaatttattaattt |
37898462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 54294348 - 54294399
Alignment:
| Q |
225 |
aataactgagtaattggatgtgtattttggagatacatacataatcatattt |
276 |
Q |
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| T |
54294348 |
aataactgtgtaattggatgtgcattttggagatgcatgcattatcatattt |
54294399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 218 - 331
Target Start/End: Complemental strand, 29141437 - 29141323
Alignment:
| Q |
218 |
gaaagtaaataactgagtaattggatgtgtattttggagatacatacataatcatatttcatccaagcaacaattggcttgaaggaag-ttgagtttttg |
316 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||| ||| |||||||||| |||| ||||||||||| |
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| T |
29141437 |
gaaagtaaataactgagtaattggatgtgtattgtagagatacatacattatcatatttaatccaagctacagttggcttgaatgaagtttgagtttttg |
29141338 |
T |
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| Q |
317 |
tgattttagccaagc |
331 |
Q |
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|||||| | |||||| |
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| T |
29141337 |
tgatttcatccaagc |
29141323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 401 - 528
Target Start/End: Complemental strand, 29141297 - 29141170
Alignment:
| Q |
401 |
attagcacagaagttcagctaaaaggttatagaaaatgataaaagatgctgaaaatatattccatgtagcagtaatatagttatgccatgaacaggcatt |
500 |
Q |
| |
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||||||||| |||||||||| |||| |||| | |||| || || ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||| | |
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| T |
29141297 |
attagcacaatagttcagctacaaggctatatgacatgaaaatagttgcagaaaatatattccatatagcagtaatataattatgccatgaacaagcact |
29141198 |
T |
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| Q |
501 |
aaatcaagcttttcttgttgtatgaatt |
528 |
Q |
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|||| |||| ||||| |||||||||||| |
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| T |
29141197 |
aaatgaagcctttctggttgtatgaatt |
29141170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 356 - 534
Target Start/End: Complemental strand, 29013941 - 29013762
Alignment:
| Q |
356 |
catttgttagtagcataaattacaaaaatctaatcagttacactgattagcacagaagttcagctaaaaggttatagaa-aatgataaaagatgctgaaa |
454 |
Q |
| |
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|||||||||||| ||| |||||| |||||||||| |||||||| |||||||||||| |||||||| |||||| || || ||| | |||||||| |
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| T |
29013941 |
catttgttagtaacatgaattactaaaatctaattagttacacaaattagcacagaaattcagctacaaggttgtataacgttgaaattttttgctgaaa |
29013842 |
T |
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| Q |
455 |
atatattccatgtagcagtaatatagttatgccatgaacaggcattaaatcaagcttttcttgttgtatgaattccaaaa |
534 |
Q |
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||| | ||||| | ||||| |||||||||||||||||||| ||| |||| |||| ||||| |||| ||||||||||||| |
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| T |
29013841 |
atacagtccatattgcagtgatatagttatgccatgaacaagcacaaaatgaagcctttctggttgcatgaattccaaaa |
29013762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 29013713 - 29013654
Alignment:
| Q |
532 |
aaactgatatgattctttacaataaaggggatatgaagaatattaactgatttgaactaa |
591 |
Q |
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|||||||||||| |||| ||||||||||||| |||||| | |||| ||||||||||||| |
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| T |
29013713 |
aaactgatatgaatcttaacaataaaggggagatgaagtagattagttgatttgaactaa |
29013654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 11921022 - 11921077
Alignment:
| Q |
208 |
taagaagtaggaaagtaaataactgagtaattggatgtgtattttggagatacata |
263 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
11921022 |
taagaagtaggaaagtaaataattgagtaattagatgtgtattttggagatacata |
11921077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 29115278 - 29115177
Alignment:
| Q |
251 |
ttggagatacatacataatcatatttcatccaagcaacaattggcttgaaggaagtt-gagtttttgtgattttagccaagcagtaatagttctcctcaa |
349 |
Q |
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||||||||||||||| || ||||||||||||||| ||| |||||||||| |||||| ||| ||||| ||||| ||||||||| |||||||||||| || |
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| T |
29115278 |
ttggagatacatacactattatatttcatccaagctacagttggcttgaatgaagttcgagattttgcgatttcagccaagcacaaatagttctccttaa |
29115179 |
T |
|
| Q |
350 |
cc |
351 |
Q |
| |
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|| |
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|
| T |
29115178 |
cc |
29115177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 552 - 626
Target Start/End: Complemental strand, 42447113 - 42447039
Alignment:
| Q |
552 |
aataaaggggatatgaagaatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaattt |
626 |
Q |
| |
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|||||||||| ||||| ||||||||| |||||||||||||| |||||| ||||||||| || ||||||||||| |
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| T |
42447113 |
aataaaggggttatgacgaatattaattgatttgaactaagtcatcaagcttgaacaagatcagtttattaattt |
42447039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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