View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_140 (Length: 267)
Name: NF1145_low_140
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_140 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 20478258 - 20478521
Alignment:
| Q |
1 |
aatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478258 |
aatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggtcacgacccttaatgtcgggtttatcaattgttatttggcggtc |
20478357 |
T |
|
| Q |
101 |
aaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20478358 |
aaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtaggtccaaaaccatccatctcc |
20478457 |
T |
|
| Q |
201 |
accaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctatgctactcc |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
20478458 |
accaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactcc |
20478521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 38513739 - 38513980
Alignment:
| Q |
1 |
aatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtc |
100 |
Q |
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|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
38513739 |
aatatgaaggctcgtggtcaagtttgatccctttcaagtaaatctgaaatatctggtcacgacctttgatgtcaggtttatcaattgttatttggcggtc |
38513838 |
T |
|
| Q |
101 |
aaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctcc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
38513839 |
aaaacgccccggtctaagtagggctttgtctaatacatcaggtctatttgtacctgccagcacaacaactccagcagtggttccaaaaccatccatctcc |
38513938 |
T |
|
| Q |
201 |
accaacaattgatttaaagtactttcacgctcatcatttgca |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
38513939 |
accaacaattgatttaaagtactttcacgttcatcatttgca |
38513980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 29728660 - 29728440
Alignment:
| Q |
20 |
aagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagt |
119 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||| || || || |
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| T |
29728660 |
aagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcaactgttatttggcgatcgaaacgcccaggcctgagc |
29728561 |
T |
|
| Q |
120 |
aaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaag |
219 |
Q |
| |
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| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29728560 |
agagctttatctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaag |
29728461 |
T |
|
| Q |
220 |
tactttcacgctcatcatttg |
240 |
Q |
| |
|
||| |||||||||||||||| |
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| T |
29728460 |
tacgatcacgctcatcatttg |
29728440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24004276 - 24004037
Alignment:
| Q |
1 |
aatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||| ||| |||||| |
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| T |
24004276 |
aatatgaaggctcgtggtcaagtttgatttttttcaaataaatctgaaatatctggtcacgacctttaatgtcgggtacatcaattgatatcgtgcggtc |
24004177 |
T |
|
| Q |
101 |
aaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctcc |
200 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| |
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|
| T |
24004176 |
aaaacgcccaggcctaagtaaggcgttgtctaatatatcagctctatttgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatttcc |
24004077 |
T |
|
| Q |
201 |
accaacaattgatttaaagtactttcacgctcatcatttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
24004076 |
accaacaattgatttaaagtactttcacgctcatcatttg |
24004037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3202 - 2971
Alignment:
| Q |
1 |
aatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtc |
100 |
Q |
| |
|
||||||||||||| | |||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
3202 |
aatatgaaggctcattgtcaagtttgattctgttcaagtaaatttgaaatatctgatcgcgacctttgatgtcgggtttgtcaattgttatttggcggtc |
3103 |
T |
|
| Q |
101 |
aaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctcc |
200 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||| |||||||||||| || ||||| |||||||||| ||| |||||||| |||||||||||| |
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|
| T |
3102 |
aaaacgccctggtctaactagggctttgtctaatacatcagctctatttgtaccagctagcacaacaactccagaagtggttccaaatccatccatctcc |
3003 |
T |
|
| Q |
201 |
accaacaattgatttaaagtactttcacgctc |
232 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
3002 |
accaacaattgatttaaagtattttcacgctc |
2971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 16838135 - 16837915
Alignment:
| Q |
20 |
aagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagt |
119 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| || |||||||| | || || |
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|
| T |
16838135 |
aagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcagctgttatttggcgatcgaaacgcccatgcctgagc |
16838036 |
T |
|
| Q |
120 |
aaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaag |
219 |
Q |
| |
|
| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16838035 |
agagctttatctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaag |
16837936 |
T |
|
| Q |
220 |
tactttcacgctcatcatttg |
240 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
16837935 |
tacgttcacgctcatcatttg |
16837915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 45284926 - 45284835
Alignment:
| Q |
85 |
ttgttatttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagca |
176 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
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|
| T |
45284926 |
ttgttatttggaggtcaaaacgccccggcctaagtagggctttgtctaatacatcaggtctattggtacctgccagcacaacaactccagca |
45284835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45284970 - 45284926
Alignment:
| Q |
1 |
aatatgaaggctcctggtcaagtttgatccttttcaagtaaatct |
45 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45284970 |
aatatgaaggctcctggtcaagtttaatccttttcaagtaaatct |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 45284842 - 45284797
Alignment:
| Q |
197 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgca |
242 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45284842 |
ctccagcaacaattgatttaaagtactttcaccctcatcatttgca |
45284797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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