View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_141 (Length: 266)
Name: NF1145_low_141
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_141 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 20477893 - 20478034
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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| T |
20477893 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
20477992 |
T |
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| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaaca |
185 |
Q |
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| T |
20477993 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaaca |
20478034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 38513374 - 38513517
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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| T |
38513374 |
agtcctatcgaaaagttgttcctttgtcatgagaaggttctcatttggaacatactgggcaaacccaagagccgatgttccgcgaggaacaatagttact |
38513473 |
T |
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| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacagc |
187 |
Q |
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| T |
38513474 |
ttcaacaatgggtcagtatgttccaagaaccaacctgcaacagc |
38513517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 29729044 - 29728901
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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| T |
29729044 |
agtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgcgcaaacccaagagctgctgttccgcgaggaacaatagttact |
29728945 |
T |
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| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacagc |
187 |
Q |
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| T |
29728944 |
ttcaataatggctcggtatgttccaagaaccaaccaacaacagc |
29728901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 16838519 - 16838376
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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| T |
16838519 |
agtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgttccgcgaggaacaatagttact |
16838420 |
T |
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| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacagc |
187 |
Q |
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| T |
16838419 |
ttcaataatggctcggtatgttccaagaaccaaccaacaacagc |
16838376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 45285333 - 45285192
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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||||||||| ||||||||||| ||||||||||||||| || ||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
45285333 |
agtcctatcaaaaagctgctc--ttgtcatgagatggttctcgtttggaacatactgcgcaaacccaagagctgctgttcctcgaggaacaatagttact |
45285236 |
T |
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| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacagc |
187 |
Q |
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| T |
45285235 |
ttcaaaaatggattagtatgttccaagaaccaacctgcaacagc |
45285192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 3568 - 3433
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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||||||||||||||| |||||||| ||||||||| ||| ||||||| | | |||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
3568 |
agtcctatcgaaaagttgctccttggtcatgagaaggttttcatttgacaaatactgggcaaacccaagagtttctgttccgcgaggaacaatagttact |
3469 |
T |
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| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaaccc |
179 |
Q |
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| T |
3468 |
ttcaacaatggctcagtatgttccaagaaccaaccc |
3433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 24005111 - 24004968
Alignment:
| Q |
44 |
agtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttact |
143 |
Q |
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|||| |||| |||||||||||||||||| ||||| ||| ||| |||||||| | |||||||||||||| || ||||| || ||||||||||| |||||| |
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| T |
24005111 |
agtcatatccaaaagctgctcctttgtcctgagaaggttctcacttggaacatattgggcaaacccaagtgctgctgtgccgcgaggaacaatggttact |
24005012 |
T |
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| Q |
144 |
ttcaacaatggctcagtatgttccaagaaccaacccgcaacagc |
187 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
24005011 |
ttcaacaatggctcacaatgttccaagaaccaacctgcaacagc |
24004968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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