View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_143 (Length: 264)

Name: NF1145_low_143
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_143
NF1145_low_143
[»] chr8 (13 HSPs)
chr8 (33-255)||(278966-279188)
chr8 (33-255)||(636664-636886)
chr8 (33-255)||(822467-822689)
chr8 (30-98)||(2623235-2623303)
chr8 (30-95)||(13231838-13231903)
chr8 (30-98)||(41456053-41456121)
chr8 (49-112)||(279736-279799)
chr8 (49-112)||(636053-636116)
chr8 (49-112)||(821856-821919)
chr8 (30-85)||(13231489-13231544)
chr8 (50-105)||(30204188-30204242)
chr8 (43-134)||(34646814-34646905)
chr8 (52-105)||(35612-35665)
[»] chr1 (10 HSPs)
chr1 (30-136)||(25476032-25476138)
chr1 (30-132)||(28651716-28651817)
chr1 (30-111)||(27702592-27702673)
chr1 (31-124)||(48621158-48621251)
chr1 (49-131)||(28652420-28652502)
chr1 (31-133)||(48621820-48621922)
chr1 (52-130)||(44633348-44633426)
chr1 (30-132)||(27818761-27818862)
chr1 (30-96)||(44634050-44634116)
chr1 (51-95)||(27573591-27573635)
[»] chr6 (5 HSPs)
chr6 (158-259)||(13475962-13476063)
chr6 (30-109)||(19109572-19109651)
chr6 (30-113)||(12029357-12029440)
chr6 (30-113)||(30921571-30921654)
chr6 (152-258)||(14020030-14020136)
[»] chr2 (6 HSPs)
chr2 (30-138)||(35063641-35063749)
chr2 (30-112)||(35064389-35064471)
chr2 (57-105)||(19601539-19601587)
chr2 (49-105)||(38356890-38356946)
chr2 (50-145)||(1300018-1300113)
chr2 (30-112)||(40056347-40056429)
[»] chr5 (9 HSPs)
chr5 (31-145)||(17115735-17115849)
chr5 (49-145)||(35145618-35145714)
chr5 (49-141)||(24153914-24154006)
chr5 (30-130)||(31079702-31079802)
chr5 (50-105)||(17116465-17116520)
chr5 (30-112)||(24153226-24153308)
chr5 (52-110)||(29108704-29108762)
chr5 (28-77)||(29108118-29108166)
chr5 (40-113)||(40816249-40816322)
[»] chr4 (10 HSPs)
chr4 (31-145)||(50071965-50072079)
chr4 (30-112)||(12007488-12007570)
chr4 (50-135)||(50071298-50071383)
chr4 (30-112)||(39631362-39631444)
chr4 (30-82)||(12007919-12007971)
chr4 (30-145)||(39484363-39484478)
chr4 (30-124)||(5473140-5473233)
chr4 (30-105)||(26305568-26305643)
chr4 (31-97)||(32641203-32641269)
chr4 (57-105)||(26439911-26439959)
[»] chr3 (6 HSPs)
chr3 (34-105)||(50766026-50766097)
chr3 (30-138)||(45004739-45004847)
chr3 (31-98)||(50824000-50824067)
chr3 (31-98)||(50851793-50851860)
chr3 (30-98)||(45005508-45005576)
chr3 (49-112)||(45145906-45145969)
[»] scaffold0301 (2 HSPs)
scaffold0301 (53-124)||(7855-7926)
scaffold0301 (30-108)||(6470-6548)
[»] chr7 (6 HSPs)
chr7 (49-96)||(4833190-4833237)
chr7 (49-98)||(21516216-21516265)
chr7 (49-98)||(21516439-21516488)
chr7 (49-98)||(21516662-21516711)
chr7 (74-133)||(17738996-17739055)
chr7 (30-88)||(35263746-35263804)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 278966 - 279188
Alignment:
Q  33 atgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaatt 132  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||| || |||||| |||||||||||||||||| |||||||    
T  278966 atgacactgacatcccctttagttttaaaacttacattaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttaatt 279065  T
Q  133 ttccatcaattttagttttttaaggaaattttcagttaacttttaaggggattcttgaattgggaaaatacaaaccttcttctttgttgtttctttagac 232  Q
    |||| ||||||||| |||||| || |||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  279066 ttccttcaattttaatttttttagaaaattttctgttaacttttaacaggattcttgaattgggaaaagacaaaccttcttctttgttgtttctttagat 279165  T
Q  233 ttttgcaaacgattttgaaattt 255  Q
    |||||||||||||||||||||||    
T  279166 ttttgcaaacgattttgaaattt 279188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 636886 - 636664
Alignment:
Q  33 atgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaatt 132  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||| || |||||| |||||||||||||||||| |||||||    
T  636886 atgacactgacatcccctttagttttaaaacttacattaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttaatt 636787  T
Q  133 ttccatcaattttagttttttaaggaaattttcagttaacttttaaggggattcttgaattgggaaaatacaaaccttcttctttgttgtttctttagac 232  Q
    |||| ||||||||| |||||| || |||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  636786 ttccttcaattttaatttttttagaaaattttctgttaacttttaacaggattcttgaattgggaaaagacaaaccttcttctttgttgtttctttagat 636687  T
Q  233 ttttgcaaacgattttgaaattt 255  Q
    |||||||||||||||||||||||    
T  636686 ttttgcaaacgattttgaaattt 636664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 822689 - 822467
Alignment:
Q  33 atgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaatt 132  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||| || |||||| |||||||||||||||||| |||||||    
T  822689 atgacactgacatcccctttagttttaaaacttacattaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttaatt 822590  T
Q  133 ttccatcaattttagttttttaaggaaattttcagttaacttttaaggggattcttgaattgggaaaatacaaaccttcttctttgttgtttctttagac 232  Q
    |||| ||||||||| |||||| || |||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  822589 ttccttcaattttaatttttttagaaaattttctgttaacttttaacaggattcttgaattgggaaaagacaaaccttcttctttgttgtttctttagat 822490  T
Q  233 ttttgcaaacgattttgaaattt 255  Q
    |||||||||||||||||||||||    
T  822489 ttttgcaaacgattttgaaattt 822467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 2623303 - 2623235
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  2623303 aaaatgacactgacatcccatctaattttaaaacttacactaacctcccttgagttttcatcaaataga 2623235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 13231903 - 13231838
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaat 95  Q
    ||||||||||||||| || ||||| |||||||||||||||||| ||||||| |||| |||||||||    
T  13231903 aaaatgacactgacaccccctctaattttaaaacttacactaacctccctttagttctcatcaaat 13231838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 41456121 - 41456053
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    |||||||||||||||||  ||||| |||| ||||||||||||| |||||||||||| || | |||||||    
T  41456121 aaaatgacactgacatctcctctaatttttaaacttacactaacctcccttaagttctcgtaaaataga 41456053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 279799 - 279736
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||| ||||||||||||| |||| |||| ||||||||||||||| |||| |||||| ||||||    
T  279799 ctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacctccctt 279736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 636053 - 636116
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||| ||||||||||||| |||| |||| ||||||||||||||| |||| |||||| ||||||    
T  636053 ctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacctccctt 636116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 821856 - 821919
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||| ||||||||||||| |||| |||| ||||||||||||||| |||| |||||| ||||||    
T  821856 ctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacctccctt 821919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 13231489 - 13231544
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagtt 85  Q
    ||||||||||| ||||||||| || ||||||||||| |||||| ||||||| ||||    
T  13231489 aaaatgacacttacatcctctttaattttaaaactttcactaacctccctttagtt 13231544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 30204188 - 30204242
Alignment:
Q  50 tctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    |||||||| |||||||||||||| |||| ||||||||| |||||||| ||||||||    
T  30204188 tctagtttaaaaacttacactaacctcc-ttaagtttttatcaaataaataaacac 30204242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 34646905 - 34646814
Alignment:
Q  43 catcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaatttt 134  Q
    |||||| ||||||||||||||||||||   ||||| |||| || | ||||||| ||||||||  || |||| ||||||| || |||||||||    
T  34646905 catcctttctagttttaaaacttacacctttctcctttaatttcttatcaaatggataaacatatctcttctctattaataccgttaatttt 34646814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 35612 - 35665
Alignment:
Q  52 tagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    ||||||||||||||||| ||| || ||||||||||| |||||||| | ||||||    
T  35612 tagttttaaaacttacattaaccttccttaagtttttatcaaatatacaaacac 35665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 25476138 - 25476032
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagtta 129  Q
    |||||||||||||||  | ||||||||||||||||||||| || |||||| ||||||| || ||||| | |||||| ||||||  |||||||||| ||||    
T  25476138 aaaatgacactgacactccctctagttttaaaacttacacgaacctccctcaagtttttatgaaataaacaaacacctcccttatctattaacaccgtta 25476039  T
Q  130 attttcc 136  Q
    |||||||    
T  25476038 attttcc 25476032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 28651716 - 28651817
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagtta 129  Q
    ||||||||||||||| || ||||| |||||||||||||| ||| ||||||||| ||| ||| |||| |||  |||||||||||| || ||||||| ||||    
T  28651716 aaaatgacactgacaccccctctatttttaaaacttacattaacctcccttaaatttacataaaattgat-tacacttcccttctctcttaacaccgtta 28651814  T
Q  130 att 132  Q
    |||    
T  28651815 att 28651817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 27702592 - 27702673
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccct 111  Q
    |||||||||||||||||| || || |||||||| |||||||||  |||||| |||||| |||||||||| |||||| |||||    
T  27702592 aaaatgacactgacatccactataattttaaaatttacactaacttcccttgagtttttatcaaatagacaaacacctccct 27702673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 48621158 - 48621251
Alignment:
Q  31 aaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacac 124  Q
    |||| ||||||||| || |||||||||||||  ||||| |||||||||||||||| ||||  |||||| |||||| |||| ||| |||||||||    
T  48621158 aaatcacactgacaccccctctagttttaaattttacattaatctcccttaagttatcatgtaatagacaaacacatcccctcattattaacac 48621251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 28652502 - 28652420
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaat 131  Q
    ||||| |||||||||||||||||| ||||||||| |||| || |||||||  |||| |||||||| || ||||||| ||||||    
T  28652502 ctctatttttaaaacttacactaacctcccttaaatttttataaaatagactaacaattcccttctctcttaacaccgttaat 28652420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 48621922 - 48621820
Alignment:
Q  31 aaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaa 130  Q
    |||||||||  ||| || || |||||| ||||| |||||||| ||||||||||||||  |  |||| | || ||| ||||||||||||||||||||||||    
T  48621922 aaatgacaccaacaccccctttagtttaaaaacatacactaacctcccttaagtttttttgtaatacacaatcacctcccttcactattaacacagttaa 48621823  T
Q  131 ttt 133  Q
    |||    
T  48621822 ttt 48621820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 44633348 - 44633426
Alignment:
Q  52 tagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaa 130  Q
    ||||||||||||||||||||| |||||||||||  |  ||||||||| ||| || ||||||  |||||||||| |||||    
T  44633348 tagttttaaaacttacactaacctcccttaagtaattttcaaatagacaaatacctcccttttctattaacaccgttaa 44633426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 27818761 - 27818862
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagtta 129  Q
    ||||||||||| ||| |||||||||||||||||| |||| | |  |||||||| ||||| |  |||||| | |||| |||||| | ||||||||| ||||    
T  27818761 aaaatgacactaacaccctctctagttttaaaacatacatttacatcccttaaattttcctttaatagacagacacctcccttga-tattaacaccgtta 27818859  T
Q  130 att 132  Q
    |||    
T  27818860 att 27818862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 44634116 - 44634050
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaata 96  Q
    ||||||||| ||||| || |||||||||||||||  | || || |||||||||||| ||||||||||    
T  44634116 aaaatgacattgacaccccctctagttttaaaacaaataccaacctcccttaagttctcatcaaata 44634050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 27573591 - 27573635
Alignment:
Q  51 ctagttttaaaacttacactaatctcccttaagttttcatcaaat 95  Q
    ||||||||||||||||||| || ||||||||| || |||||||||    
T  27573591 ctagttttaaaacttacaccaacctcccttaaattctcatcaaat 27573635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 13476063 - 13475962
Alignment:
Q  158 aaattttcagttaacttttaaggggattcttgaattgggaaaatacaaaccttcttctttgttgtttctttagacttttgcaaacgattttgaaatttcc 257  Q
    |||||||| |||||||||||| ||||||||| |||||| |||  |||||||||||| ||||||| ||||||| || | |||| |||||||||||| ||||    
T  13476063 aaattttctgttaacttttaacgggattcttcaattggcaaacgacaaaccttcttttttgttgattctttatacctatgcagacgattttgaaaattcc 13475964  T
Q  258 ag 259  Q
    ||    
T  13475963 ag 13475962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 19109651 - 19109572
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcc 109  Q
    ||||| ||| |||||||| ||||| |||||||||||||| ||| |||||||||||||| || |||||||| |||||||||    
T  19109651 aaaataacattgacatcccctctatttttaaaacttacaataacctcccttaagtttttataaaatagattaacacttcc 19109572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 12029357 - 12029440
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttc 113  Q
    ||||||||||| ||| |||||||||||| ||||   ||| |||  ||||||||||||||| |||||||||| |||| |||||||    
T  12029357 aaaatgacactaacaccctctctagtttcaaaatgaacattaacatcccttaagttttcaacaaatagatatacacatcccttc 12029440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 30921654 - 30921571
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttc 113  Q
    ||||||||||| | |||| ||||||||||||||| |||| ||| |||||||||||| | |||| |||||  ||||| |||||||    
T  30921654 aaaatgacactaaaatcccctctagttttaaaacatacaataaactcccttaagttctaatcatatagactaacacctcccttc 30921571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 14020030 - 14020136
Alignment:
Q  152 ttaaggaaattttcagttaacttttaaggggattcttgaattgggaaaatacaaaccttcttctttgttgtttctttagacttttgcaaacgattttgaa 251  Q
    ||||| |||||||  |||||||||||| | ||||||| |||||| |||| ||||||| | || ||||| | |||| || |||| || | |||||||||||    
T  14020030 ttaagaaaattttttgttaacttttaacgagattcttcaattggcaaaagacaaaccattttttttgtcgattctctacacttatggagacgattttgaa 14020129  T
Q  252 atttcca 258  Q
    | |||||    
T  14020130 aattcca 14020136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 35063641 - 35063749
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagtta 129  Q
    |||||| ||||||||  | ||||||||||||||||||||  || |||||||||||||| || ||||||| |||||  ||||||  |||||||||| ||||    
T  35063641 aaaatgtcactgacactccctctagttttaaaacttacatgaacctcccttaagtttttatgaaatagacaaacatctcccttatctattaacactgtta 35063740  T
Q  130 attttccat 138  Q
    |||||||||    
T  35063741 attttccat 35063749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 35064471 - 35064389
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||||||||| |||||| |||||||||||||||| |||||||  |||||||| || |||||||||||||||| || ||||||    
T  35064471 aaaatgacactaacatcccctctagttttaaaactcacactaacttcccttaaattctcatcaaatagataaatacctccctt 35064389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 19601539 - 19601587
Alignment:
Q  57 ttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  19601539 ttaaaacttacactaatctcccttaagtttttatcaaatatacaaacac 19601587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 38356890 - 38356946
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    ||||||||||||||| |||| ||| |||||||||||||| |||||||| | ||||||    
T  38356890 ctctagttttaaaacatacattaacctcccttaagttttaatcaaatatacaaacac 38356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 1300018 - 1300113
Alignment:
Q  50 tctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaattttccatcaatttt 145  Q
    |||||||| |||||| || |||| ||| || | ||| | || ||||||| |||||| |||||||  ||||||||| ||||| ||||||||||||||    
T  1300018 tctagtttcaaaactaacgctaacctctctaatgttctaatgaaatagacaaacacctcccttccttattaacaccgttaactttccatcaatttt 1300113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 40056347 - 40056429
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||||||||| ||| ||  |||||||| |||||||||| ||| |||||||||||| ||||  |||||| || ||| ||||||    
T  40056347 aaaatgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatccctt 40056429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 17115735 - 17115849
Alignment:
Q  31 aaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaa 130  Q
    |||||||||| ||| |  ||||||||||||||||||||| || |||||||||||| |||||||||| | |||||  |||||||  ||||||||  |||||    
T  17115735 aaatgacactaacaccaactctagttttaaaacttacaccaacctcccttaagttctcatcaaatatacaaacatctcccttccatattaacaatgttaa 17115834  T
Q  131 ttttccatcaatttt 145  Q
    |||||| | ||||||    
T  17115835 ttttccgttaatttt 17115849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 35145618 - 35145714
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaattttccatcaatttt 145  Q
    |||||||||||||||||||||||| ||||||  |||| |||| ||||||| |||||| ||||||   | |||||||||||| |||||| | ||||||    
T  35145618 ctctagttttaaaacttacactaacctccctcgagttctcataaaatagacaaacacatcccttacttgttaacacagttacttttccgttaatttt 35145714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 24154006 - 24153914
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaattttccatcaa 141  Q
    |||||||||||||||| ||| ||| |||||||||||||  |||||||| | |||||| ||||||   |||||||||  ||| || ||||||||    
T  24154006 ctctagttttaaaactaacattaacctcccttaagtttctatcaaataaacaaacacctcccttttatattaacaccattagttctccatcaa 24153914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 31079802 - 31079702
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagtta 129  Q
    |||||| |||| ||| | |||||||||||||||   ||| ||| |||||||| ||||||| |||||||| |||||| |||||||   |||||||| ||||    
T  31079802 aaaatggcactaacaccttctctagttttaaaatgaacattaacctcccttaggttttcagcaaatagacaaacacatcccttcttgattaacaccgtta 31079703  T
Q  130 a 130  Q
    |    
T  31079702 a 31079702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 17116520 - 17116465
Alignment:
Q  50 tctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    ||||||||||||||| ||||||| |||| ||||| |||||||||||| | ||||||    
T  17116520 tctagttttaaaactaacactaacctcctttaagctttcatcaaatacacaaacac 17116465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 24153226 - 24153308
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||||| || |||| || |||||||||||||| | ||||||| |||||||||||| | || |||| || |||||| ||||||    
T  24153226 aaaatgagacagacacccactctagttttaaaagtaacactaacctcccttaagttctaatgaaatggacaaacacctccctt 24153308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 29108762 - 29108704
Alignment:
Q  52 tagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccc 110  Q
    ||||||||||||||||||||| ||||||| |||||| | |||||| | |||||| ||||    
T  29108762 tagttttaaaacttacactaacctcccttgagtttttaacaaatatacaaacacctccc 29108704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 29108118 - 29108166
Alignment:
Q  28 caaaaatgacactgacatcctctctagttttaaaacttacactaatctcc 77  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| ||||    
T  29108118 caaaaatgacactaacaccc-ctctagttttaaaacttacactaacctcc 29108166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 40816249 - 40816322
Alignment:
Q  40 tgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttc 113  Q
    |||| ||| ||||||||||||||   ||| ||| |||||||||||||||||| |||||| ||||| | ||||||    
T  40816249 tgacttcccctctagttttaaaataaacattaacctcccttaagttttcatctaatagacaaacattacccttc 40816322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 50072079 - 50071965
Alignment:
Q  31 aaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaa 130  Q
    |||||||||| ||| || || |||||||||||||||||| || |||||||||||| |||||||||| | |||||  |||||||  ||||||||  |||||    
T  50072079 aaatgacactaacaccccctttagttttaaaacttacacaaacctcccttaagttctcatcaaatatacaaacatctcccttccatattaacaatgttaa 50071980  T
Q  131 ttttccatcaatttt 145  Q
    |||||| | ||||||    
T  50071979 ttttccgttaatttt 50071965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 12007488 - 12007570
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||||||||||||| || ||||||||||||||| |||| ||| ||| |||||||| |||||||||| | |||||| ||||||    
T  12007488 aaaatgacactgacaccccctctagttttaaaacatacattaacctcacttaagttctcatcaaatacacaaacacctccctt 12007570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 50071298 - 50071383
Alignment:
Q  50 tctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaattttc 135  Q
    ||||||||||||| | ||||||| |||||||||| |||||||||||| | |||||||||||||   ||||||||| |||| |||||    
T  50071298 tctagttttaaaattaacactaacctcccttaagctttcatcaaatacacaaacacttcccttacttattaacaccgttagttttc 50071383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 39631444 - 39631362
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    ||||||| | |||||||| ||||| |||||||||||||| ||||||||||||||||||  | |||||| | |||| |||||||    
T  39631444 aaaatgatattgacatcccctctatttttaaaacttacaataatctcccttaagttttgctaaaataggttaacatttccctt 39631362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 12007971 - 12007919
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaa 82  Q
    ||||||||||||||| || ||||| |||||||||||||||||| |||||||||    
T  12007971 aaaatgacactgacaccccctctaattttaaaacttacactaacctcccttaa 12007919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 39484363 - 39484478
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagtta 129  Q
    ||||||||||  | |||| | ||| |||||||||||||||| | |||||| ||||| |||| ||||| |||||||| ||||||   ||||||||| ||||    
T  39484363 aaaatgacaccaatatccccactaattttaaaacttacacttacctccctcaagttctcatgaaatatataaacacatcccttatttattaacaccgtta 39484462  T
Q  130 attttccatcaatttt 145  Q
     |||||| | ||||||    
T  39484463 cttttccgttaatttt 39484478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 5473140 - 5473233
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacac 124  Q
    ||||| ||| ||||| ||||| |||||||||||||||||| || ||||||||| || |  ||||||| | |||| ||||||||| ||||||||||    
T  5473140 aaaataacaatgacaccctctttagttttaaaacttacac-aaactcccttaaattattgtcaaatacacaaactcttcccttctctattaacac 5473233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 26305568 - 26305643
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    |||||||||| |||| |  ||||| |||||||||||||| ||||||||| ||| |||| ||||||| || ||||||    
T  26305568 aaaatgacaccgacacctcctctaattttaaaacttacattaatctcccataaatttttatcaaatggacaaacac 26305643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 32641203 - 32641269
Alignment:
Q  31 aaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatag 97  Q
    |||||||||||||| |  ||||| |||||||| |||||||||  ||||||||||| |||| ||||||    
T  32641203 aaatgacactgacacctcctctaattttaaaaattacactaacatcccttaagttctcataaaatag 32641269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 26439911 - 26439959
Alignment:
Q  57 ttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    |||||||||||| ||||||||||||| || |||||||||| | ||||||    
T  26439911 ttaaaacttacaataatctcccttaaattctcatcaaatacacaaacac 26439959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 50766026 - 50766097
Alignment:
Q  34 tgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacac 105  Q
    ||||||| ||| || ||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  50766026 tgacactaacaccccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacac 50766097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 45004739 - 45004847
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagtta 129  Q
    |||||| || ||||| || || |||||||||| ||||||  || |||||||||||||| || ||||||| |||||  ||||||  |||||||||| ||||    
T  45004739 aaaatgtcaatgacaccccctttagttttaaatcttacatgaacctcccttaagtttttatgaaatagacaaacatctcccttatctattaacactgtta 45004838  T
Q  130 attttccat 138  Q
    |||||||||    
T  45004839 attttccat 45004847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 50824000 - 50824067
Alignment:
Q  31 aaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    |||||||||| ||| |||||||||||| ||||| |||||||| |||| ||||||||||||||| ||||    
T  50824000 aaatgacactaacaccctctctagtttgaaaacctacactaacctcctttaagttttcatcaattaga 50824067  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 50851860 - 50851793
Alignment:
Q  31 aaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    |||||||||| ||| |||||||||||| ||||| |||||||| |||| ||||||||||||||| ||||    
T  50851860 aaatgacactaacaccctctctagtttgaaaacctacactaacctcctttaagttttcatcaattaga 50851793  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 45005576 - 45005508
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    ||||||||||| ||||   | |||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  45005576 aaaatgacactaacatttccactagttttaaaactcacactgatctcccttaagttctcatcaaataga 45005508  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 45145906 - 45145969
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttccctt 112  Q
    |||||||||||||||| |||||||  ||||||||||||  |||||||| | |||||| ||||||    
T  45145906 ctctagttttaaaactaacactaacatcccttaagtttctatcaaataaacaaacacctccctt 45145969  T

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Target: scaffold0301 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 7855 - 7926
Alignment:
Q  53 agttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttcccttcactattaacac 124  Q
    ||||||||||| |||||||||||| |||||||| |||||||||| | |||||| | ||||  ||||||||||    
T  7855 agttttaaaacctacactaatctctcttaagttctcatcaaatacacaaacaccttccttttctattaacac 7926  T

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Target: scaffold0301; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 6548 - 6470
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttcatcaaatagataaacacttc 108  Q
    ||||| ||| ||||||  |||||||||||||||||||||||||   |||||||||| | |||||||||  |||||||||    
T  6548 aaaataacattgacattatctctagttttaaaacttacactaacaccccttaagttattatcaaataggcaaacacttc 6470  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 4833237 - 4833190
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaata 96  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  4833237 ctctagttttaaaacttacactaaccttccttaagttttaatcaaata 4833190  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 21516216 - 21516265
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    ||||||||||||||  ||||||||||||||||||||| | ||||||||||    
T  21516216 ctctagttttaaaatatacactaatctcccttaagttcttatcaaataga 21516265  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 21516439 - 21516488
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    ||||||||||||||  ||||||||||||||||||||| | ||||||||||    
T  21516439 ctctagttttaaaatatacactaatctcccttaagttcttatcaaataga 21516488  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 21516662 - 21516711
Alignment:
Q  49 ctctagttttaaaacttacactaatctcccttaagttttcatcaaataga 98  Q
    ||||||||||||||  ||||||||||||||||||||| | ||||||||||    
T  21516662 ctctagttttaaaatatacactaatctcccttaagttcttatcaaataga 21516711  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 17739055 - 17738996
Alignment:
Q  74 ctcccttaagttttcatcaaatagataaacacttcccttcactattaacacagttaattt 133  Q
    ||||||||||||||||||||||| ||| | ||| |||||| |||||||||| ||| ||||    
T  17739055 ctcccttaagttttcatcaaataaatagaaactacccttctctattaacactgtttattt 17738996  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 35263746 - 35263804
Alignment:
Q  30 aaaatgacactgacatcctctctagttttaaaacttacactaatctcccttaagttttc 88  Q
    ||||||||| | ||||||| |||| |||| ||||||||| ||| |||||||||||||||    
T  35263746 aaaatgacattaacatcctttctaattttgaaacttacattaacctcccttaagttttc 35263804  T

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