View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_144 (Length: 263)
Name: NF1145_low_144
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_144 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 43200473 - 43200219
Alignment:
| Q |
1 |
catatctctaaaagctcacaactaaattacctgctagatataacatcaaaagtttacattgattgtgtatttttcattgataaagcatctttacatcagt |
100 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43200473 |
catatctataaaagctcacaactaagttacctgctagatataccatcaaaagtttacattgattgtgtatttttcattaataaagcatctttacatcagt |
43200374 |
T |
|
| Q |
101 |
taattagaatgtaactatccatgttactactttgttggcgattcttcatcatcattggtgtcttcatacgattcttctggttgagtaggaacaaatgtta |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43200373 |
taattagaatgtaactattcatattactactttgttggcgattcttcatcatcattggtgtcttcatacgattcttctggttgaggaggaacaaatgtta |
43200274 |
T |
|
| Q |
201 |
atttgagcacttctaccaaccatggggacataggaccatcagtgcgtttcttttc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43200273 |
atttgagcacttctaccaaccatggggacataggaccatcagtgcgtttcttttc |
43200219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University