View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_146 (Length: 260)
Name: NF1145_low_146
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_146 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 11928693 - 11928529
Alignment:
| Q |
41 |
aagttagaatgagaatgaaacaaagacgcgacatcattatctataagaccaaaatcaattaacctcaactctcttaagtttggaataattttcctgattg |
140 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| | || || |||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
11928693 |
aagtaagaatgagaatgaaacaaagacgcgacatcattatctagaagaccaaattgaaccaatctcaactctcataagtttggagtaattttactgattg |
11928594 |
T |
|
| Q |
141 |
tttgcaagaagtgaggcaacgagccaaaacgaagaaattgtcctctcaagacaagatttgttaaa |
205 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11928593 |
tttgcaggaagtgaggcaacgagccaaaacgaagaaattgtcctctcaagacaagatttgttaaa |
11928529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 11852560 - 11852666
Alignment:
| Q |
39 |
aaaagttagaatgagaatgaaacaaagacgcgacatcattatctataagaccaaaatcaattaacctcaactctcttaagtttggaataattttcctgat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
11852560 |
aaaagttagaatgagaatgaaacaaagacacgacatcagtatctataagaccaaaatcaactaacctcaactctcttaagtttggaataaacttcatgat |
11852659 |
T |
|
| Q |
139 |
tgtttgc |
145 |
Q |
| |
|
||||||| |
|
|
| T |
11852660 |
tgtttgc |
11852666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 11833296 - 11833401
Alignment:
| Q |
39 |
aaaagttagaatgagaatgaaacaaagacgcgacatcattatctataagaccaaaatcaattaacctcaactctcttaagtttggaataattttcctgat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
11833296 |
aaaagttagaatgagaatgaaacaaagacacgacatcagtatctataagaccaaaatcaactaacctcaactctcttaagtttggaataaacttcatgat |
11833395 |
T |
|
| Q |
139 |
tgtttg |
144 |
Q |
| |
|
|||||| |
|
|
| T |
11833396 |
tgtttg |
11833401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 11962985 - 11962876
Alignment:
| Q |
39 |
aaaagttagaatgagaatgaaacaaagacgcgacatcattatctataagaccaaaatcaattaacctcaactctcttaagtttggaataattttcctgat |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| || ||| |||| |
|
|
| T |
11962985 |
aaaagttagaatgagaatgaaacaaagacgcgacatcattatctatcagaccaaattcaactaacctcaactctcttaagtttggaaaaaacttcatgat |
11962886 |
T |
|
| Q |
139 |
tgtttgcaag |
148 |
Q |
| |
|
|||||||||| |
|
|
| T |
11962885 |
tgtttgcaag |
11962876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University