View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_149 (Length: 254)
Name: NF1145_low_149
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_149 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 10549856 - 10550069
Alignment:
| Q |
17 |
ggattatataatccgaatatatagtatttacaccccattcaacgtgaacaagtacatgcacatgggttgtatcgtattgtttcggattacataatccaaa |
116 |
Q |
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| T |
10549856 |
ggattatataatccaaatatatagtatttacgccccattcaacgtgaacaagtacatgcgcatgggttgtatcgtattgtttcggattacataatccaaa |
10549955 |
T |
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| Q |
117 |
atgtgttaaaacatta-----gagataatccgaatagtcacaggacaaaacaaaatgcatcnnnnnnncactagttcttaaccagacaattttttcacct |
211 |
Q |
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| T |
10549956 |
atgtgttaaaacattacggattatataatccgaatagtcacaggataaaacaaaatgcatctttttttcactagttcttaaccagacagttttttcacct |
10550055 |
T |
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| Q |
212 |
aaattcctgaactt |
225 |
Q |
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| T |
10550056 |
aaattcctgaactt |
10550069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10549806 - 10549838
Alignment:
| Q |
1 |
tgtactgagtaaatttggattatataatccgaa |
33 |
Q |
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| T |
10549806 |
tgtactgagtaaattcggattatataatccgaa |
10549838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 31268007 - 31268082
Alignment:
| Q |
35 |
atatagtatttacaccccattcaacgtgaacaagtacatgcacatgggttgtatcgtattgtttcggattacataa |
110 |
Q |
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| T |
31268007 |
atatagcatttaagccccatgcaacgtgaactaggacatgcacatggggtgtatcgtattaattcagattacataa |
31268082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 25478725 - 25478637
Alignment:
| Q |
17 |
ggattatataatccgaatatatagtatttacaccccattcaacgtgaacaagtacatgcacatgggttgtatcgtattgtttcggatta |
105 |
Q |
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| T |
25478725 |
ggattatataatccaaaatgttagcatttacgccccatgcaacgtaaacaagtacatttacatggggtgtatcagaatgtttcggatta |
25478637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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