View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_150 (Length: 253)

Name: NF1145_low_150
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_150
NF1145_low_150
[»] chr6 (5 HSPs)
chr6 (5-243)||(18188952-18189188)
chr6 (1-243)||(17818109-17818351)
chr6 (1-243)||(18852613-18852852)
chr6 (1-157)||(22062890-22063046)
chr6 (5-245)||(23519134-23519375)
[»] chr2 (2 HSPs)
chr2 (17-243)||(24500922-24501148)
chr2 (15-157)||(25339499-25339641)
[»] chr7 (12 HSPs)
chr7 (1-243)||(23513659-23513904)
chr7 (1-239)||(13741015-13741256)
chr7 (1-220)||(10439717-10439936)
chr7 (17-174)||(5395802-5395959)
chr7 (1-241)||(12565596-12565838)
chr7 (1-157)||(540138-540294)
chr7 (1-157)||(4311406-4311562)
chr7 (15-122)||(9729468-9729575)
chr7 (15-157)||(16327160-16327302)
chr7 (15-122)||(9581616-9581723)
chr7 (15-113)||(8783482-8783580)
chr7 (17-81)||(4462102-4462166)
[»] chr5 (7 HSPs)
chr5 (1-243)||(20446224-20446466)
chr5 (1-241)||(18487442-18487685)
chr5 (1-243)||(21282289-21282530)
chr5 (1-243)||(23602019-23602258)
chr5 (1-243)||(24939129-24939365)
chr5 (1-243)||(24218427-24218664)
chr5 (15-113)||(23712100-23712198)
[»] chr4 (8 HSPs)
chr4 (1-241)||(11497992-11498233)
chr4 (1-243)||(10629343-10629582)
chr4 (1-243)||(45240236-45240480)
chr4 (1-155)||(18290701-18290855)
chr4 (15-157)||(15349237-15349379)
chr4 (1-122)||(42711154-42711275)
chr4 (15-174)||(14687165-14687324)
chr4 (50-157)||(11918126-11918232)
[»] chr8 (4 HSPs)
chr8 (1-243)||(21855155-21855394)
chr8 (1-242)||(20040448-20040690)
chr8 (1-243)||(17619334-17619576)
chr8 (15-157)||(20000977-20001119)
[»] scaffold0566 (1 HSPs)
scaffold0566 (1-241)||(1202-1442)
[»] chr3 (11 HSPs)
chr3 (1-243)||(13090186-13090427)
chr3 (1-243)||(9362336-9362575)
chr3 (17-242)||(20561943-20562168)
chr3 (17-242)||(20564251-20564476)
chr3 (17-242)||(20559635-20559860)
chr3 (1-243)||(13096300-13096545)
chr3 (1-157)||(6813541-6813697)
chr3 (4-151)||(20153465-20153609)
chr3 (15-122)||(12777897-12778004)
chr3 (23-174)||(15024365-15024516)
chr3 (1-77)||(3246892-3246968)
[»] scaffold0220 (2 HSPs)
scaffold0220 (46-243)||(11737-11932)
scaffold0220 (1-51)||(9704-9754)
[»] scaffold0222 (1 HSPs)
scaffold0222 (27-241)||(18421-18637)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-243)||(16962-17192)
[»] scaffold0113 (2 HSPs)
scaffold0113 (1-174)||(38012-38182)
scaffold0113 (187-243)||(38204-38260)
[»] chr1 (3 HSPs)
chr1 (1-238)||(21785822-21786059)
chr1 (62-243)||(22626466-22626649)
chr1 (1-157)||(27045546-27045702)
[»] scaffold0090 (1 HSPs)
scaffold0090 (15-157)||(29440-29582)
[»] scaffold0012 (3 HSPs)
scaffold0012 (1-243)||(12823-13062)
scaffold0012 (14-243)||(8727-8953)
scaffold0012 (1-59)||(8651-8709)
[»] scaffold0035 (1 HSPs)
scaffold0035 (15-157)||(51946-52088)
[»] scaffold0485 (1 HSPs)
scaffold0485 (15-157)||(11297-11440)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 18188952 - 18189188
Alignment:
Q  5 tcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagata 104  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  || | |||||||||| ||    
T  18188952 tcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggta 18189051  T
Q  105 gaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatctaag 204  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||            ||||||||||| ||||||    
T  18189052 gaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggtcatggattctaaaaaaaat--agtagtgagggtttctaag 18189149  T
Q  205 tctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  18189150 tctagatagtagtttccctcaatcctatttatccctttg 18189188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 17818351 - 17818109
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| || ||||||    
T  17818351 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaatta 17818252  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||    |||  ||||            ||||||||||||||    
T  17818251 ggtagaataatcaagaaattagcattattgactctccactcatattggtaattgtgagaaggactatgagttctaataaaaacatggtagtgagggtatc 17818152  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    |||||||||||||||||||||||||||| |||| |||||||||    
T  17818151 taagtctaggtagtagtttccctcaatcatatttatccctttg 17818109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 18852852 - 18852613
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| |||||||||||||||   || |||||||||| || ||||||  |||| || ||||||    
T  18852852 ctcttcatcaccaccatcattaccatcattttgtacctgtgggttagtgccaacataa---aaattttctaccatctccggattagtaatatctgaatta 18852756  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncat-gtagtgagggtat 199  Q
    | ||||||||||| | || || ||||||| ||||| ||||||||||||||||||||| ||| | ||||||||||         ||| ||||||||||| |    
T  18852755 ggtagaataatcaag-aaataacattatttactctccactcatattggtaattgtgagaagggccatggattcttgaaaaaaacatggtagtgagggttt 18852657  T
Q  200 ctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||||  || ||||||||||||||||||||||| |||||||||    
T  18852656 ctaagtaaagatagtagtttccctcaatcctatttatccctttg 18852613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 22062890 - 22063046
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||    
T  22062890 ctcttcatcaccaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaatta 22062989  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtga 157  Q
    | |||||||||||  ||||||||  || ||| ||| ||  ||| |||||||||||||    
T  22062990 ggtagaataatcaaacaattagctctaatgattctccatgcatgttggtaattgtga 22063046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 23519134 - 23519375
Alignment:
Q  5 tcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagata 104  Q
    |||||| | ||||||||||||||||  |||||| |||| ||||| |||||||||| ||| ||||| |||| || ||||||  | |||||| ||| || ||    
T  23519134 tcatcaccaccatcatcaccatcatcatgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggta 23519233  T
Q  105 gaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncat-gtagtgagggtatctaa 203  Q
    |||||||||  ||||||||  |||| ||| | | | |||||||||| |||||| ||| ||||||| || |         ||| ||| |||||||||||||    
T  23519234 gaataatcaaacaattagccctatttactttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagacatggtattgagggtatctaa 23519333  T
Q  204 gtctaggtagtagtttccctcaatcctattgatccctttgct 245  Q
    |||||| || ||||| |||||||||||||||| ||| |||||    
T  23519334 gtctagataatagttcccctcaatcctattgacccccttgct 23519375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 24501148 - 24500922
Alignment:
Q  17 tcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgc 116  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||| ||||||||||| ||    
T  24501148 tcatcaccat-attgtgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagc 24501050  T
Q  117 aattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncat-gtagtgagggtatctaagtctaggtagta 215  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||| | ||||||||||         ||| ||||||||||| ||||||||||| |||||    
T  24501049 aattagcattattgactctccactaatattggtaattgtgagaagggccatggattctaagaaaaaacatggtagtgagggtttctaagtctagatagta 24500950  T
Q  216 gtttccctcaatcctattgatccctttg 243  Q
    ||||||||||||||||||||||||||||    
T  24500949 gtttccctcaatcctattgatccctttg 24500922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 25339499 - 25339641
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    ||||| |||||||||  ||||| ||||  ||||||||||||||||  || ||||| ||||||| | ||||  | ||||||| ||||| |||||||||||     
T  25339499 catcaccaccatcatcatgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaa 25339598  T
Q  115 gcaattagcattattgactctgcactcatattggtaattgtga 157  Q
     ||||||||  |||||||  | |||||||||||||||||||||    
T  25339599 acaattagccctattgaccttccactcatattggtaattgtga 25339641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 23513904 - 23513659
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||    
T  23513904 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaatta 23513805  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct--nnnnnnnnncat-gtagtgagggt 197  Q
    | ||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||| ||| | ||||||||||           ||| |||||||||||    
T  23513804 ggtagaataatcaagtaattagcattattgactctccactcatataggtaattgtgagaagggccatggattctaaaaaaaaaaacatggtagtgagggt 23513705  T
Q  198 atctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
     ||||||||||| ||||||||||||||||||||||| |||||||||    
T  23513704 ttctaagtctagatagtagtttccctcaatcctatttatccctttg 23513659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13741256 - 13741015
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| || |||  ||||||||||||||    
T  13741256 ctcttcatcaccaccatcatcaccatcattgtgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaatta 13741157  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct--nnnnnnnnncat-gtagtgagggt 197  Q
    | ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||| | |||||||| |           ||| |||||||||||    
T  13741156 ggtagaataatcaagcaattatcattattgactctccactcatattggtaattgtgagaagggccatggattataagaaaaaaaacatggtagtgagggt 13741057  T
Q  198 atctaagtctaggtagtagtttccctcaatcctattgatccc 239  Q
     ||||||||||| |||||||||||||||||| |||| |||||    
T  13741056 ttctaagtctagatagtagtttccctcaatcttatttatccc 13741015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10439717 - 10439936
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  |||| || ||||||    
T  10439717 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaatta 10439816  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||| ||| |  |||| ||||            ||||||||||||||    
T  10439817 ggtagaataatcaagaaattatcattattgactctccactcatattggtaattgtgagaagggctatgggttctaataaaaacatggtagtgagggtatc 10439916  T
Q  201 taagtctaggtagtagtttc 220  Q
    ||||||||||||||||||||    
T  10439917 taagtctaggtagtagtttc 10439936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 5395959 - 5395802
Alignment:
Q  17 tcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgc 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| || ||||||| ||||||||||| |     
T  5395959 tcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaaga 5395860  T
Q  117 aattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct 174  Q
    |||||||||||||||| || ||||||| ||||||||||| | ||| ||| ||||||||    
T  5395859 aattagcattattgacgctccactcattttggtaattgttagaagggtcgtggattct 5395802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12565838 - 12565596
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| || |||  |||| || ||||||    
T  12565838 ctcttcatcaccaccatcatcaccatcattgtgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaatta 12565739  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggatt-ctnnnnnnnnncatg-tagtgagggta 198  Q
    | |  |||||||| | ||||||||||||||||||| ||||||||||||||||||| | ||| | |||||||| |          |||| ||||||||||     
T  12565738 ggttaaataatcaagaaattagcattattgactctccactcatattggtaattgttagaagggccatggattccaaaaaaaaaacatgctagtgagggtt 12565639  T
Q  199 tctaagtctaggtagtagtttccctcaatcctattgatccctt 241  Q
    |||||||| || |||||||||||||||||| |||| |||||||    
T  12565638 tctaagtcaagatagtagtttccctcaatcgtatttatccctt 12565596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 540138 - 540294
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||    
T  540138 ctcttcatcaccaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaatta 540237  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtga 157  Q
    | |||||||||||  |||||||| ||| ||| ||| |  ||||||||||||||||||    
T  540238 ggtagaataatcaaacaattagctttaatgattctcctttcatattggtaattgtga 540294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 4311562 - 4311406
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||  ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||| ||||||  ||||||||||||||    
T  4311562 ctcttcatcaccaccatcatcaccatcatcttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaatta 4311463  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtga 157  Q
    | |||||||||||  ||||||||  || | | ||| || ||||||||||||||||||    
T  4311462 ggtagaataatcaaacaattagctctaataattctccattcatattggtaattgtga 4311406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 9729575 - 9729468
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||| ||||||| |||||||||||     
T  9729575 catcatcaccatcatcttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaa 9729476  T
Q  115 gcaattag 122  Q
     |||||||    
T  9729475 acaattag 9729468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 16327160 - 16327302
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    ||||| |||||||||  ||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||| ||||||| |||     
T  16327160 catcaccaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaa 16327259  T
Q  115 gcaattagcattattgactctgcactcatattggtaattgtga 157  Q
     ||||||||  || | | ||| || ||||||||||||||||||    
T  16327260 acaattagctctaataattctccattcatattggtaattgtga 16327302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 9581723 - 9581616
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||||||||||||  ||||||||||| ||||| |||||||||| ||| ||||| ||||||| | ||||  ||||||||||||||| |||||||||||     
T  9581723 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaa 9581624  T
Q  115 gcaattag 122  Q
     |||||||    
T  9581623 acaattag 9581616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 8783482 - 8783580
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatca 113  Q
    ||||| |||||| ||  ||||| ||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  | |||||||||||||  ||||||||||    
T  8783482 catcaccaccatgatcttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatca 8783580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 4462102 - 4462166
Alignment:
Q  17 tcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcgg 81  Q
    |||||||||||||  |||||| |||| ||||| |||| ||||| ||| ||||| |||||||||||    
T  4462102 tcatcaccatcatcatgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgg 4462166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 20446224 - 20446466
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| || ||||||    
T  20446224 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaatta 20446323  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| ||| |  |||  ||||            ||||||||||||||    
T  20446324 ggtagaataatcaagaaattagcattattgactctccactcatattggtaattgtgagaagggctatgagttctaataaaaacatggtagtgagggtatc 20446423  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    |||||||||||||||||||||||||||| |||| ||| |||||    
T  20446424 taagtctaggtagtagtttccctcaatcatatttatctctttg 20446466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18487442 - 18487685
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||| || ||||||    
T  18487442 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaatta 18487541  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct--nnnnnnnnncat-gtagtgagggt 197  Q
    | ||||||||||| | ||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||           ||| |||||||||||    
T  18487542 ggtagaataatcaagaaattagcattattgactctccactcatattggtaattgttataagggccatggattctaaaaaaaaaaacatcgtagtgagggt 18487641  T
Q  198 atctaagtctaggtagtagtttccctcaatcctattgatccctt 241  Q
     ||||||||||| |||||||||| |||||||||||| |||||||    
T  18487642 ttctaagtctagatagtagtttctctcaatcctatttatccctt 18487685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 21282289 - 21282530
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| | ||||||     
T  21282289 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaattt 21282388  T
Q  101 gatagaataatcatgcaa-ttagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtat 199  Q
    | ||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||| ||| || |||||||||            ||||||||||| |    
T  21282389 ggtagaataatcaagcaatttagcgttattgactctccactcatattggtaattgtgagaagggttatggattctaaaaaaaat--agtagtgagggtct 21282486  T
Q  200 ctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||    
T  21282487 ctaagtctagatagtagtttccctcaatccaatttatccctttg 21282530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23602019 - 23602258
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||  |||| || ||||||    
T  23602019 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaatta 23602115  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||||||||||||||||  |||||||||||| |||||||| ||  | ||||||||||            ||||||||||| ||    
T  23602116 ggtagaataatcaagaaattagcattattgactcgccactcatattgggaattgtgagaaaggccatggattctaaaaaaaacatggtagtgagggtttc 23602215  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||    
T  23602216 taagtatagatagtagtttccctcaatcctatttatccctttg 23602258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 24939365 - 24939129
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||| |||  |||| || ||||||    
T  24939365 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaatta 24939269  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncat-gtagtgagggtat 199  Q
    | ||||||||||| | ||||||||||||||||||  |||||||||||| |||||||| ||| | ||||||||||         ||| ||||||||||| |    
T  24939268 ggtagaataatcaagaaattagcattattgactcgccactcatattgggaattgtgagaagggccatggattctaaaaaaaaacatggtagtgagggttt 24939169  T
Q  200 ctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
     ||    ||| ||||||||||||||||||||||| |||||||||    
T  24939168 tta----tagatagtagtttccctcaatcctatttatccctttg 24939129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 24218664 - 24218427
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||| ||||||||||||||| ||||| |||||||||||||||    |||||||||||| || ||||||  |||| || ||||||    
T  24218664 ctcttcatcaccaccatcattaccatcattgtgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaatta 24218568  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncat-gtagtgagggtat 199  Q
    | ||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||| ||| | ||||| ||||         ||| ||||||||||| |    
T  24218567 ggtagaataatcaagaaattagcattattgactctccactcatattggtaa-tgtgaaaagggccatggtttct--aaaaaaacatggtagtgagggttt 24218471  T
Q  200 ctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||||  || ||||| ||||||||||||||||| |||||||||    
T  24218470 ctaagtaaagatagtaatttccctcaatcctatttatccctttg 24218427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 23712100 - 23712198
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatca 113  Q
    |||||||||||||||  ||||||||||| ||||  |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||| |||||||||||    
T  23712100 catcatcaccatcatcttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatca 23712198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11497992 - 11498233
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    ||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| |  ||||||    
T  11497992 ctctttatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaatta 11498091  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncat-gtagtgagggtat 199  Q
    | ||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||| | ||| |||||| |||||         ||| ||||||||||| |    
T  11498092 ggtagaataatcaagcaattaacataattgactctccactcatattggtaattgttagaagggtcatgaattctaaaaaaaaacatggtagtgagggttt 11498191  T
Q  200 ctaagtctaggtagtagtttccctcaatcctattgatccctt 241  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  11498192 ctaagtctagatagtagtttccctcaatcctatttatccctt 11498233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 10629582 - 10629343
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||| ||||||||||  |||| || ||||||    
T  10629582 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaatta 10629486  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||||||||||||||||| |||||||||||| |||||||| ||| | ||||||||||            ||||||||||| ||    
T  10629485 ggtagaataatcaagaaattagcattattgactctccactcatattgggaattgtgagaagggccatggattctaaaaaaaacatggtagtgagggtttc 10629386  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||    
T  10629385 taagtatagatagtagtttccctcaatcctatttatccctttg 10629343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 45240236 - 45240480
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| | ||||||     
T  45240236 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaattt 45240335  T
Q  101 gatagaataatcatgcaa-ttagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct-nnnnnnnnncat-gtagtgagggt 197  Q
    | ||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||| ||| | |||| |||||          ||| |||||||||||    
T  45240336 ggtagaataatcaagcaatttagcgttattgactctccactcatattggtaattgtgagaagggccatgaattctaaaaaaaaaacatggtagtgagggt 45240435  T
Q  198 atctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
     ||||||||||| |||||||||||| |||||||||| |||||||||    
T  45240436 ttctaagtctagatagtagtttccc-caatcctatttatccctttg 45240480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 18290855 - 18290701
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||  |||| || ||||||    
T  18290855 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaatta 18290756  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgt 155  Q
    | |||||||||||   |||| |||||||||| | | |||||||||||||||||||    
T  18290755 ggtagaataatcaataaatttgcattattgaatttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 15349237 - 15349379
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||||||||||||  ||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||| |||||||||||     
T  15349237 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 15349336  T
Q  115 gcaattagcattattgactctgcactcatattggtaattgtga 157  Q
     ||||||||  || ||| ||| || ||||||||||||||||||    
T  15349337 acaattagctctaatgattctccattcatattggtaattgtga 15349379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 42711154 - 42711275
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||  ||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||    
T  42711154 ctcttcatcaccaccatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaatta 42711253  T
Q  101 gatagaataatcatgcaattag 122  Q
    | |||||||||||  |||||||    
T  42711254 ggtagaataatcaaacaattag 42711275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 14687165 - 14687324
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||||| ||| ||  ||||||||||| ||||| |||||||||| ||| ||||| ||| ||| ||||||  ||||||||||||||| ||| |||||||     
T  14687165 catcatcatcattatcttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaa 14687264  T
Q  115 gcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct 174  Q
     ||||||||  || | | ||| || | ||||||||||||||||  || ||||||| ||||    
T  14687265 acaattagctctaataattctccatttatattggtaattgtgagtagggtcatgggttct 14687324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 11918126 - 11918232
Alignment:
Q  50 ccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgcaattagcattattgactctgcactcatattggt 149  Q
    |||||||||| ||| ||||| ||||||||||| ||  | ||||||| ||||| |||||||||||   |||||||  |||||||| | |||||||||||||    
T  11918126 ccaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatca-aaaattagccctattgactttccactcatattggt 11918224  T
Q  150 aattgtga 157  Q
    ||||||||    
T  11918225 aattgtga 11918232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 21855155 - 21855394
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||   ||||||||||||||||||||||  |||| || ||||||    
T  21855155 ctcttcatcaccaccatcatcaccatcattgtgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaatta 21855251  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| ||| || |||| ||||            ||||||||||||||    
T  21855252 ggtagaataatcaagaaattagcattattgactctccactcatattggtaattgtgagaagggttatgggttctaataaaaacatggtagtgagggtatc 21855351  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    |||||||||||||||||||||||||||| |||| |||||||||    
T  21855352 taagtctaggtagtagtttccctcaatcatatttatccctttg 21855394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20040448 - 20040690
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||||  |||| || ||||||    
T  20040448 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaatta 20040547  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncat-gtagtgagggtat 199  Q
    | ||||||||||| | |||||| | |||||||||| ||||||||||||||||||||| ||| | |||| |||||         ||| ||||||||||| |    
T  20040548 ggtagaataatcaagaaattagtagtattgactctccactcatattggtaattgtgagaagggccatgaattctaaaaaaaaacatggtagtgagggttt 20040647  T
Q  200 ctaagtctaggtagtagtttccctcaatcctattgatcccttt 242  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  20040648 ctaagtctagatagtagtttccctcaatcctatttatcccttt 20040690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 17619576 - 17619334
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||  |||| || ||||||    
T  17619576 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaatta 17619480  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattc--tnnnnnnnnncat-gtagtgagggt 197  Q
    | ||||||||||| | ||||||||||||||||||| |||||||||||| |||||||| ||| | |||| ||||  |         ||| |||||||||||    
T  17619479 ggtagaataatcaagaaattagcattattgactctccactcatattggaaattgtgagaagggccatgaattctataaaaaaaaacatggtagtgagggt 17619380  T
Q  198 atctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
     ||||||| ||| ||||||||||||||||||||||| |||| ||||    
T  17619379 ttctaagtatagatagtagtttccctcaatcctatttatccttttg 17619334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 20001119 - 20000977
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||||||||||||  ||||||||||| ||||| |||||||||| ||| ||||| ||||||| | ||||  ||||||||||||||| |||||||||||     
T  20001119 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaa 20001020  T
Q  115 gcaattagcattattgactctgcactcatattggtaattgtga 157  Q
     ||||||||  || ||| ||| || ||||||||||||||||||    
T  20001019 acaattagctctaatgattctccattcatattggtaattgtga 20000977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 1442 - 1202
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    ||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||  |||| || ||||||    
T  1442 ctctttatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaatta 1343  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||||||| ||||||||| ||||||||||||||||||| | ||| |||||| |||||            ||||||||||| ||    
T  1342 ggtagaataatcaagaaattagcataattgactctccactcatattggtaattgttagaagggtcatgaattctaaaaaaaacatggtagtgagggtttc 1243  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctt 241  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  1242 taagtctagatagtagtttccctcaatcctatttatccctt 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 13090186 - 13090427
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||  |||| || ||||||    
T  13090186 ctcttcatgaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaatta 13090282  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct-nnnnnnnnncatg-tagtgagggta 198  Q
    | ||||||||||| | ||||||||||||||||||  |||||||||||| |||||||| ||| | ||||||||||          |||| ||||||||||     
T  13090283 ggtagaataatcaagaaattagcattattgactcaccactcatattgggaattgtgagaagggccatggattctaaaaaaaaaacatgctagtgagggtt 13090382  T
Q  199 tctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  13090383 tctaagtatagatagtagtttccctcaatcctatttatccctttg 13090427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9362336 - 9362575
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||  |||| |  ||||||    
T  9362336 ctcttcattaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaatta 9362432  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| | ||||||||||||||||||| ||||||||||||  ||||||| ||| | ||||||||||            ||||||||||| ||    
T  9362433 ggtagaataatcaagaaattagcattattgactctccactcatattggggattgtgagaagggccatggattctaaaaaaaacatggtagtgagggtttc 9362532  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||    
T  9362533 taagtatagatagtagtttccctcaatcctatttatccctttg 9362575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 20562168 - 20561943
Alignment:
Q  17 tcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgc 116  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||  |||| || ||||||| ||||||||||| |     
T  20562168 tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20562069  T
Q  117 aattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatctaagtctaggtagtag 216  Q
    |||||| | |||||||||| ||||||||||||||||||||| ||| | |||| |||||            ||||||||||| ||||||||||| ||||||    
T  20562068 aattagtagtattgactctccactcatattggtaattgtgagaagggccatgaattctaaaaaaaacatggtagtgagggtttctaagtctagatagtag 20561969  T
Q  217 tttccctcaatcctattgatcccttt 242  Q
    ||||||||||||||||| ||||||||    
T  20561968 tttccctcaatcctatttatcccttt 20561943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 20564476 - 20564251
Alignment:
Q  17 tcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgc 116  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||  |||| || ||||||| ||||||||||| |     
T  20564476 tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20564377  T
Q  117 aattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatctaagtctaggtagtag 216  Q
    |||||| | |||||||||| ||||||||||||||||||||| ||| | |||| |||||            ||||||||||| ||||||||||| ||||||    
T  20564376 aattagtagtattgactctccactcatattggtaattgtgagaagggccatgaattctaaaaaaaacatggtagtgagggtttctaagtctagatagtag 20564277  T
Q  217 tttccctcaatcctattgatcccttt 242  Q
    ||||||||||||||||| ||||||||    
T  20564276 tttccctcaatcctatttatcccttt 20564251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 20559860 - 20559635
Alignment:
Q  17 tcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgc 116  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||| || |||  |||| || ||||||| ||||||||||| |     
T  20559860 tcatcaccatcattgtgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20559761  T
Q  117 aattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatctaagtctaggtagtag 216  Q
    |||||| | |||||||||| ||||||||||||||||||||| ||| | |||| |||||            ||||||||||| ||||||||||| ||||||    
T  20559760 aattagtagtattgactctccactcatattggtaattgtgagaagggccatgaattctaaaaaaaacatggtagtgagggtttctaagtctagatagtag 20559661  T
Q  217 tttccctcaatcctattgatcccttt 242  Q
    ||||||||||||||||| ||||||||    
T  20559660 tttccctcaatcctatttatcccttt 20559635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13096545 - 13096300
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||   ||||||||||||||||||||||  |||| || ||||||    
T  13096545 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaatta 13096449  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct-----nnnnnnnnncat-gtagtgag 194  Q
    | ||||||||||| | |||||| |||||||||||| ||||||| |||| |||||||| ||| | ||||||||||              ||| ||||||||    
T  13096448 ggtagaataatcaagaaattagaattattgactctccactcatgttgggaattgtgagaagggccatggattctaaaaaaaaaaaaaacatggtagtgag 13096349  T
Q  195 ggtatctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||| ||||||| |||||||||||| |||||||||||||| |||||||||    
T  13096348 ggtttctaagtataggtagtagttaccctcaatcctatttatccctttg 13096300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6813697 - 6813541
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||    
T  6813697 ctcttcatcaccaccatcattaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaatta 6813598  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtga 157  Q
    | |||||||||||  ||||||||  || ||| ||| ||  |||||||||||||||||    
T  6813597 ggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtga 6813541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 20153609 - 20153465
Alignment:
Q  4 ttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagat 103  Q
    ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| | ||||   ||| || ||   || |    
T  20153609 ttcatcaccaccatcatcaccatcattgtgtacctgtaggttagtgccaacataaacaaagttttctaccacctccagattaggaatatctga---aggt 20153513  T
Q  104 agaataatcatgcaattagcattattgactctgcactcatattggtaa 151  Q
    |||||||||| | ||||||||  ||||||||| |||||||||||||||    
T  20153512 agaataatcaagaaattagcagcattgactctccactcatattggtaa 20153465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 12777897 - 12778004
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||||||||||||  ||||||||||| ||||| |||||||||| ||| ||||| ||||||| || |||  ||||||||||||||| |||||||||||     
T  12777897 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaa 12777996  T
Q  115 gcaattag 122  Q
     |||||||    
T  12777997 acaattag 12778004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 15024516 - 15024365
Alignment:
Q  23 ccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgcaattag 122  Q
    |||||||  ||||| ||||||||||| |||||||||  ||| ||||| ||||||| ||||||  | ||||| | ||||| ||||||||| |  |||||||    
T  15024516 ccatcatcttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattag 15024417  T
Q  123 cattattgactctgcactcatattggtaattgtgataagtgtcatggattct 174  Q
    |  |||| | ||| || ||||||||||||||||||  || ||||||| ||||    
T  15024416 ctctattaattctccattcatattggtaattgtgagtagggtcatgggttct 15024365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3246892 - 3246968
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccacct 77  Q
    |||||||||| | ||||||||||||||||  ||||||||||| ||||| | || ||||| ||| ||||| |||||||    
T  3246892 ctcttcatcaccaccatcatcaccatcatcttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 11737 - 11932
Alignment:
Q  46 agtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgcaattagcattattgactctgcactcatat 145  Q
    |||||||||||||||||||||||||||||||| | ||||  |||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  11737 agtgccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatat 11836  T
Q  146 tggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    |||||||||||| ||| ||||||||||||            ||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||    
T  11837 tggtaattgtgagaagggtcatggattctaaaaaaaat--agtagtgagggtttctaagtctagatagtagtttccctcaatcctatctatccctttg 11932  T

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Target: scaffold0220; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9704 - 9754
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgcc 51  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  9704 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgcc 9754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 18637 - 18421
Alignment:
Q  27 cattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgcaattagcatt 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| || ||||||| ||||||||||| | ||||||||||    
T  18637 cattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcatt 18538  T
Q  127 attgactctgcactcatattggtaattgtgataagtgtcatggattct-nnnnnnnnncat-gtagtgagggtatctaagtctaggtagtagtttccctc 224  Q
    ||||||||| ||||||||||||||||||| ||||| | ||| | ||||          ||| ||||||||||| ||| ||||||| ||| ||||||||||    
T  18537 attgactctccactcatattggtaattgttataagggccatcggttctaaaaaaaaaacatggtagtgagggtttctgagtctagataggagtttccctc 18438  T
Q  225 aatcctattgatccctt 241  Q
    ||||||||| |||||||    
T  18437 aatcctatttatccctt 18421  T

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Target: scaffold0026 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 17192 - 16962
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||| ||||||||||||||||||| |||          |||||||||||||||||||||  | |||  |||| |||||||||    
T  17192 ctcttcatcaccaccatcatcaacatcattgtgtacctgtgggtta----------aaaccaagttttctaccacctctgtattagtaatatccgaatta 17103  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||            | ||||||||| ||    
T  17102 ggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggtcatggattctgaaaaaaat--agcagtgagggtttc 17005  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  17004 taagtctagatagtagtttccctcaatcctatttatccctttg 16962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 38012 - 38182
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||| | |||  |||| || ||||||    
T  38012 ctcttcatcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttagaattagtaatatctgaatta 38108  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct 174  Q
    | ||||||||||| | ||||||||||||||||||  |||||||||||| |||||||| ||| | ||||||||||    
T  38109 ggtagaataatcaagaaattagcattattgactcgccactcatattggaaattgtgagaagggccatggattct 38182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 38204 - 38260
Alignment:
Q  187 gtagtgagggtatctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||||||||| ||||| | ||| ||||||||||||||||||||||| |||||||||    
T  38204 gtagtgagggtttctaaatatagatagtagtttccctcaatcctatttatccctttg 38260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 21785822 - 21786059
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||  |||| || ||||||    
T  21785822 ctcttcatcaccaccatcatcaccattattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaatta 21785918  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattct--nnnnnnnnncat-gtagtgagggt 197  Q
    | ||||| ||||| | ||||||||||||||||||| ||||||| |||||| |||| | ||| | |||| |||||           ||| |||||||||||    
T  21785919 ggtagaaaaatcaagaaattagcattattgactctccactcatgttggtacttgttagaagggccatgaattctaaaaaaaaaaacatcgtagtgagggt 21786018  T
Q  198 atctaagtctaggtagtagtttccctcaatcctattgatcc 238  Q
     ||||| ||||| ||||||||||||||||||||||| ||||    
T  21786019 ttctaaatctagatagtagtttccctcaatcctatttatcc 21786059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 22626466 - 22626649
Alignment:
Q  62 aagttttctaccaccttcggattcataatgtccgaattagatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataag 161  Q
    |||||||||||||||  ||||||  |||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||    
T  22626466 aagttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaag 22626565  T
Q  162 tgtcatggattct--nnnnnnnnncat-gtagtgagggtatctaagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
     | ||||||||||           ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  22626566 -ggcatggattctaagaaaaaaaacatggtagtgagggtatctaagtctagatagtagtttccctcaatcctatttatccctttg 22626649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 27045702 - 27045546
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||||||  ||||||||||||||    
T  27045702 ctcttcatcaccaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaatta 27045603  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtga 157  Q
    | |||||||||||  ||||||||  || ||| ||| ||  |||||||||||||||||    
T  27045602 ggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtga 27045546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 29582 - 29440
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||| ||||||||  ||||||||||| ||||| |||||||||| ||| ||||||||||||| ||||||  ||||||||||||||| ||||||||||||    
T  29582 catcattaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcat 29483  T
Q  115 gcaattagcattattgactctgcactcatattggtaattgtga 157  Q
     ||||||||  || ||| ||| || ||||||||||||||||||    
T  29482 acaattagctctaatgattctccattcatattggtaattgtga 29440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12823 - 13062
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaatta 100  Q
    |||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||   |||||||||||||||| | ||||  |||| ||  | |||    
T  12823 ctcttcatcaccaccatcatcaccatcattatgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaattta 12919  T
Q  101 gatagaataatcatgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatc 200  Q
    | ||||||||| | | |||||||||||||||||||  |||||||||||||| ||||| ||  | ||||||||||            ||||||||||| ||    
T  12920 ggtagaataataaggaaattagcattattgactctctactcatattggtaactgtgagaaaggacatggattctaaaaaaaacatggtagtgagggtttc 13019  T
Q  201 taagtctaggtagtagtttccctcaatcctattgatccctttg 243  Q
    ||||| ||| || | | |||||||||||||||| |||||||||    
T  13020 taagtatagatattcgcttccctcaatcctatttatccctttg 13062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 8727 - 8953
Alignment:
Q  14 ccatcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatca 113  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||   |||||||||||||||| | ||||  |||| ||  | |||| ||||||||| |    
T  8727 ccatcatcaccatcattgtgtacatgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataataa 8823  T
Q  114 tgcaattagcattattgactctgcactcatattggtaattgtgataagtgtcatggattctnnnnnnnnncatgtagtgagggtatctaagtctaggtag 213  Q
     | |||||||||||||||||||  |||||||||||||| ||||| ||  | ||||||||||            ||||||||||| ||||||| ||| ||     
T  8824 ggaaattagcattattgactctctactcatattggtaactgtgagaaaggacatggattctaaaaaaaacatggtagtgagggtttctaagtatagatat 8923  T
Q  214 tagtttccctcaatcctattgatccctttg 243  Q
    | | |||||||||||||||| |||||||||    
T  8924 tcgcttccctcaatcctatttatccctttg 8953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8651 - 8709
Alignment:
Q  1 ctcttcatcaacgccatcatcaccatcattgtgtacctgtggattagtgccaacataaa 59  Q
    |||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||    
T  8651 ctcttcatcaccaccatcatcaccatcattgtgtatctgtgggttagtgccaacataaa 8709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 51946 - 52088
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagttttctaccaccttcggattcataatgtccgaattagatagaataatcat 114  Q
    |||||||||||||||  ||||||||||| ||||| |||||||||| ||| ||||| ||||||| |||| |  ||||||||||||||| ||||||| |||     
T  51946 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaa 52045  T
Q  115 gcaattagcattattgactctgcactcatattggtaattgtga 157  Q
     ||||||||  || | | ||| || ||||||||||||||||||    
T  52046 acaattagctctaataattctccattcatattggtaattgtga 52088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 11297 - 11440
Alignment:
Q  15 catcatcaccatcattgtgtacctgtggattagtgccaacataaaccaagtttt-ctaccaccttcggattcataatgtccgaattagatagaataatca 113  Q
    ||||| ||||||||   ||||||||||| ||||| |||||||||| ||| |||| | ||||||| | ||||  | ||||||| ||||| |||||||||||    
T  11297 catcaccaccatcaccttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatca 11396  T
Q  114 tgcaattagcattattgactctgcactcatattggtaattgtga 157  Q
      ||||||||  || | | ||| |||||||||||||||||||||    
T  11397 aacaattagctctaataattctccactcatattggtaattgtga 11440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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