View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_151 (Length: 253)
Name: NF1145_low_151
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_151 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 17717949 - 17717796
Alignment:
| Q |
1 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717949 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
17717850 |
T |
|
| Q |
101 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717849 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
17717796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 47816209 - 47816056
Alignment:
| Q |
1 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816209 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
47816110 |
T |
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| Q |
101 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816109 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
47816056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 47380738 - 47380585
Alignment:
| Q |
1 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47380738 |
tcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaa |
47380639 |
T |
|
| Q |
101 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
154 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47380638 |
gtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgt |
47380585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 45112830 - 45112703
Alignment:
| Q |
1 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
100 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||| | ||| || |||| |
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| T |
45112830 |
tcatcgataaaaagtattatatcatcactttgtttgatttcttccatcagtttcttcaacctctcctcaaactcaccacggtatttggttccggctacaa |
45112731 |
T |
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| Q |
101 |
gtagacccatatctagggttataaccta |
128 |
Q |
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| | |||||| ||||||||||||||||| |
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| T |
45112730 |
gcaaacccatgtctagggttataaccta |
45112703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 40243625 - 40243475
Alignment:
| Q |
1 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||||| |||||| |||| |
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| T |
40243625 |
tcatcaatgaaaagtattatttcatcgctttgtttgatttcctccattagttttttcaatctttcttcaaattctccacggtatttagttccagctacaa |
40243526 |
T |
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| Q |
101 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttca |
151 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
40243525 |
gtagacccatatctagggttataacctgcatcatgcagaacaaggctttca |
40243475 |
T |
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