View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_154 (Length: 252)
Name: NF1145_low_154
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_154 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 53659499 - 53659654
Alignment:
| Q |
97 |
gattgagctaccatagacttttcaatttacttcatttactatagccaatatatactttacttcattcaaatatttttgtagtgcaagtataatttgctag |
196 |
Q |
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| T |
53659499 |
gattgagctaccatagacttctcaatttacttcatttactatagccaatatatactttacttcattcaaatatttttgtagtgcaagtataatttgctag |
53659598 |
T |
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| Q |
197 |
tgaaagtatacataccttctggaccactccaactgctgcttgcaatggggacaaat |
252 |
Q |
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| T |
53659599 |
tgaaagtatacataccttctggaccactccaactgctgcttgcaatggggacaaat |
53659654 |
T |
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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 53659374 - 53659465
Alignment:
| Q |
5 |
cagcaccacagaagcaattccaccaactttggatgacaatgccttggaatgttgggccttaaaccctgcaatttatccccaaatctcatcta |
96 |
Q |
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| T |
53659374 |
cagcaccactgaagcaattccaccaactttggatgacaatgccttggaattttgggccttaaaccctgcaatttatccccaaatctcatcta |
53659465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 9209321 - 9209273
Alignment:
| Q |
198 |
gaaagtatacataccttctggaccactccaactgctgcttgcaatgggg |
246 |
Q |
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| T |
9209321 |
gaaaggatacagaccttctgcaccacaccaactgctgcttgtaatgggg |
9209273 |
T |
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