View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_159 (Length: 251)
Name: NF1145_low_159
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_159 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 7547855 - 7547617
Alignment:
| Q |
13 |
aatatgccacacacaactcatgataaatgggaattgatttggtacacatctcaccagaaatctccttctgtggaagtggacttcatattaatggcttatg |
112 |
Q |
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| T |
7547855 |
aatatgccacacacaactcatgataaatgggaattgatttggtacacatctcaccagaaatctccttctgtggaagtggacttcatattaatggcttatg |
7547756 |
T |
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| Q |
113 |
catctttaatacaaagagctttacagaaaataggcggtagatatttgagggagacactagaagaaccaaacagcttaccattattatgattgcttctgac |
212 |
Q |
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| T |
7547755 |
catctttaatacaaagagctttacagaaaataggcagtagatatttgagggagacactagaagaaccaaacagcttaccattattatgattgcttctgac |
7547656 |
T |
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| Q |
213 |
aaacactgaatgcagtcccgaagaccaactatgccgtat |
251 |
Q |
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| T |
7547655 |
aaacactgaatgcagtcccgaagaccaactatgccgtat |
7547617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 1129101 - 1128892
Alignment:
| Q |
13 |
aatatgccacacacaactcatgataaatgggaattgatttggtacacatctcaccagaaatctccttctgtggaagtggacttcatattaatggcttatg |
112 |
Q |
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||||||| ||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
1129101 |
aatatgcaacacacagctgattataaatgggaattgaattggtacacatctcaccagaaatctccttctgcagaagtggacttcatattaatggcctatg |
1129002 |
T |
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| Q |
113 |
catctttaatacaaagagctttacagaaaataggcggtagatatttgagggagacactagaagaaccaaacagcttaccattattatgattgcttctgac |
212 |
Q |
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| T |
1129001 |
catctctaatatatagagctttacagaaaatagaggttagatatttgagggagacac-------accagacagcttaccaaaatgatgattgcttctgac |
1128909 |
T |
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| Q |
213 |
aaacactgaatgcagtc |
229 |
Q |
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| T |
1128908 |
aaacactgaatgcagtc |
1128892 |
T |
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