View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_162 (Length: 251)
Name: NF1145_low_162
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_162 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43238283 - 43238520
Alignment:
| Q |
1 |
tcaagcaaaaattggagaatnnnnnnnttatattattttataccaaaataaattgaagacacaccaatatttactaattatatttatacatatgttttca |
100 |
Q |
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| T |
43238283 |
tcaagcaaaaattggagaataaaaaaattatattattttataccaaaataaattgaagacacatcaatatttactaattatatttatacatatgttttca |
43238382 |
T |
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| Q |
101 |
tattttaaaatcatagcatgannnnnnnncatttcaaaactgtcacatacattttctctatatgtgagcaaataatcatccaatagtttatttctcataa |
200 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
43238383 |
tattttaaaatcatagtatgattttttt-catttcaaaactgtcacattcattttctctatatgtgagcaaataatcatccaacagtttatctctcataa |
43238481 |
T |
|
| Q |
201 |
tgttacgcgtttatttattcataactcaaattcaatatt |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43238482 |
tgttacgcgtttatttattcataactcaaattcaatatt |
43238520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 27428522 - 27428755
Alignment:
| Q |
5 |
gcaaaaattggagaatnnnnnnnttatattattttataccaaaataaattgaagacacaccaatatttactaattatatttatacatatgttttcatatt |
104 |
Q |
| |
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|||||||||||||||| |||||| ||||| |||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||| |||||||| |
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| T |
27428522 |
gcaaaaattggagaatacaaaaattatatcattttgtaccaaaa--aattggagacacatcaatatctactaattatatttatatgtatgtcttcatatt |
27428619 |
T |
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| Q |
105 |
ttaaaatcatagcatgannnnnnnncatttcaaaactgtcacatacat---tttctctatatgtgagcaaataatcatccaatagtttatttctcataat |
201 |
Q |
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| T |
27428620 |
ttaaaattatagcatgatttttt--catttcaacactatcacatacatatttttctctatatgtgagcaaataatcatccaccaatttatctctcataat |
27428717 |
T |
|
| Q |
202 |
gttacgcgtttatttattcataactcaaattcaatatt |
239 |
Q |
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|||||||||||||||||||||| || ||||||||||| |
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| T |
27428718 |
tttacgcgtttatttattcataaatccaattcaatatt |
27428755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 7339384 - 7339435
Alignment:
| Q |
28 |
ttatattattttataccaaaataaattgaagacacaccaatatttactaatta |
80 |
Q |
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|||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| |
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| T |
7339384 |
ttatatcattttatactcaaa-aaattgaagacacaccaatatctactaatta |
7339435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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