View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_163 (Length: 248)
Name: NF1145_low_163
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_163 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 29878047 - 29877876
Alignment:
| Q |
1 |
attggaatctgaggccttcaaatttttctctctccctctaacagagaaagaaaaagctggtcctgcaaatccatttgggtatggtaacaaaaggattgga |
100 |
Q |
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| T |
29878047 |
attggaatctgaggccttcaaatttttctctctccctctaacagagaaagaaaaagctggtcctgcaaatccatttgggtatggtaacaaaaggattgga |
29877948 |
T |
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| Q |
101 |
ctcaatggtgatgttggttgggttgaataccttcttctcaataccaatcaagaacataatttctctcttcat |
172 |
Q |
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| T |
29877947 |
cccaatggtgatgttggttgggttgaataccttcttctcaataccaatcaagaacataatttctctcttcat |
29877876 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 21569468 - 21569538
Alignment:
| Q |
68 |
aatccatttgggtatggtaacaaaaggattggactcaatggtgatgttggttgggttgaataccttcttct |
138 |
Q |
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| T |
21569468 |
aatccatttgggtatggtaacaagaaaattggacaaaatggtgatattggttgggttgaatatcttcttct |
21569538 |
T |
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