View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_166 (Length: 247)
Name: NF1145_low_166
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_166 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 29878023 - 29878177
Alignment:
| Q |
1 |
aaatttgaaggcctcagattccaattgggatatagcttccatcgggattccatggtttatgactttgaagaatccaaaatcttcacaagcttttactatg |
100 |
Q |
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| T |
29878023 |
aaatttgaaggcctcagattccaattgggatatagcttccatagggattccatggtttatgactttgaagaatccaaaatcttcacaagcttttactatg |
29878122 |
T |
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| Q |
101 |
aggctctttgcatctggttttgataggtcaacaagaggaattgatgaggaaaatg |
155 |
Q |
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| T |
29878123 |
aggctctttgcatctggttttgataggtcaacaagaggaattgatgaggaaaatg |
29878177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 12616255 - 12616307
Alignment:
| Q |
50 |
ccatggtttatgactttgaagaatccaaaatcttcacaagcttttactatgag |
102 |
Q |
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| T |
12616255 |
ccatggttaatcacattgaagaaaccatattcttcacaagcttttactatgag |
12616307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 21569376 - 21569306
Alignment:
| Q |
50 |
ccatggtttatgactttgaagaatccaaaatcttcacaagcttttactatgaggctctttgcatctggttt |
120 |
Q |
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| T |
21569376 |
ccatggtttatcaccttaaagaatccaaactcttcacatgcttttactataaggttttttgcatcgggttt |
21569306 |
T |
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