View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_17 (Length: 580)

Name: NF1145_low_17
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_17
NF1145_low_17
[»] chr8 (12 HSPs)
chr8 (243-532)||(38370526-38370816)
chr8 (199-248)||(31810432-31810481)
chr8 (141-192)||(12736372-12736423)
chr8 (199-242)||(27518413-27518456)
chr8 (199-249)||(31505030-31505080)
chr8 (202-248)||(40098753-40098799)
chr8 (194-239)||(12736357-12736402)
chr8 (194-239)||(24052921-24052966)
chr8 (128-188)||(24820302-24820362)
chr8 (199-247)||(31505136-31505184)
chr8 (199-247)||(31810328-31810376)
chr8 (199-239)||(41387860-41387900)
[»] chr4 (19 HSPs)
chr4 (12-247)||(34762945-34763182)
chr4 (202-253)||(2198036-2198087)
chr4 (199-249)||(54164911-54164961)
chr4 (194-247)||(22235353-22235406)
chr4 (14-59)||(34754962-34755007)
chr4 (199-246)||(31933642-31933689)
chr4 (199-242)||(56328548-56328591)
chr4 (217-247)||(3094382-3094412)
chr4 (141-228)||(23614415-23614498)
chr4 (199-241)||(39160912-39160954)
chr4 (194-248)||(56257428-56257482)
chr4 (199-247)||(21224783-21224832)
chr4 (199-247)||(14450951-14450999)
chr4 (199-247)||(19934632-19934680)
chr4 (199-247)||(19934736-19934784)
chr4 (202-246)||(22720607-22720651)
chr4 (199-239)||(29006837-29006877)
chr4 (199-247)||(54164807-54164855)
chr4 (199-247)||(54713092-54713140)
[»] chr7 (22 HSPs)
chr7 (267-399)||(39681882-39682013)
chr7 (194-246)||(2456674-2456726)
chr7 (194-246)||(3967700-3967752)
chr7 (198-248)||(34750321-34750371)
chr7 (194-247)||(2456330-2456383)
chr7 (205-246)||(47534965-47535006)
chr7 (131-192)||(47708408-47708469)
chr7 (194-238)||(3967798-3967842)
chr7 (131-182)||(3967712-3967763)
chr7 (199-246)||(8127925-8127972)
chr7 (129-187)||(3967782-3967840)
chr7 (199-237)||(28306319-28306357)
chr7 (205-246)||(34750432-34750474)
chr7 (199-248)||(12274907-12274956)
chr7 (202-251)||(25079308-25079357)
chr7 (202-247)||(38238885-38238930)
chr7 (201-242)||(41803721-41803762)
chr7 (205-246)||(47708396-47708437)
chr7 (199-239)||(7701190-7701230)
chr7 (199-247)||(10414933-10414981)
chr7 (199-247)||(25245241-25245289)
chr7 (145-189)||(34565002-34565046)
[»] chr3 (12 HSPs)
chr3 (194-246)||(39964290-39964342)
chr3 (199-247)||(9170106-9170154)
chr3 (199-242)||(8504849-8504892)
chr3 (199-241)||(21217166-21217208)
chr3 (199-241)||(24075447-24075489)
chr3 (202-248)||(51617324-51617370)
chr3 (193-246)||(26331308-26331361)
chr3 (198-247)||(27786450-27786499)
chr3 (193-246)||(39682701-39682754)
chr3 (197-242)||(52215976-52216021)
chr3 (199-247)||(39579591-39579639)
chr3 (129-189)||(50626764-50626824)
[»] chr5 (10 HSPs)
chr5 (266-387)||(12573996-12574117)
chr5 (199-251)||(5259483-5259535)
chr5 (204-247)||(42910815-42910858)
chr5 (199-244)||(25792944-25792989)
chr5 (199-251)||(71249-71301)
chr5 (199-247)||(1098725-1098773)
chr5 (199-247)||(10437735-10437783)
chr5 (199-247)||(15549423-15549471)
chr5 (201-241)||(18033455-18033495)
chr5 (199-247)||(41180311-41180359)
[»] chr2 (21 HSPs)
chr2 (248-392)||(38216941-38217089)
chr2 (129-191)||(44587716-44587778)
chr2 (194-236)||(44587736-44587778)
chr2 (268-349)||(26283894-26283975)
chr2 (194-249)||(44587635-44587690)
chr2 (199-241)||(3098224-3098266)
chr2 (197-247)||(23143480-23143530)
chr2 (204-246)||(23143589-23143631)
chr2 (197-247)||(23555270-23555320)
chr2 (204-246)||(23555379-23555421)
chr2 (199-241)||(25270954-25270996)
chr2 (264-399)||(39942232-39942364)
chr2 (202-247)||(5574211-5574256)
chr2 (201-242)||(15119877-15119918)
chr2 (194-247)||(20218639-20218692)
chr2 (199-248)||(38181858-38181907)
chr2 (201-242)||(38227198-38227239)
chr2 (202-242)||(3121523-3121563)
chr2 (199-239)||(13333545-13333585)
chr2 (194-246)||(20218541-20218593)
chr2 (194-234)||(40363226-40363266)
[»] chr1 (18 HSPs)
chr1 (131-192)||(15057664-15057725)
chr1 (194-241)||(15057657-15057704)
chr1 (194-259)||(5091763-5091828)
chr1 (141-247)||(38636223-38636325)
chr1 (199-247)||(19175686-19175734)
chr1 (199-247)||(38834605-38834653)
chr1 (199-247)||(45115268-45115316)
chr1 (199-242)||(8338674-8338717)
chr1 (194-249)||(17468191-17468246)
chr1 (199-246)||(38758398-38758445)
chr1 (194-247)||(24419527-24419580)
chr1 (199-248)||(28725564-28725613)
chr1 (202-247)||(31008253-31008298)
chr1 (202-242)||(4060272-4060312)
chr1 (199-247)||(6156628-6156676)
chr1 (199-247)||(14214627-14214675)
chr1 (199-247)||(36040140-36040188)
chr1 (199-247)||(36040244-36040292)
[»] chr6 (8 HSPs)
chr6 (199-247)||(16121063-16121111)
chr6 (199-249)||(6560649-6560699)
chr6 (202-248)||(17773602-17773648)
chr6 (199-247)||(3203665-3203713)
chr6 (199-247)||(8146047-8146095)
chr6 (211-251)||(18097170-18097210)
chr6 (199-251)||(31398216-31398268)
chr6 (223-255)||(31632229-31632261)


Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 243 - 532
Target Start/End: Complemental strand, 38370816 - 38370526
Alignment:
Q  243 agtatttttcattttctaacctgtgttcattttgacttgctaatgagaagatacgagactcgtaaaatgaaccgttgtgatgtagagaaaatgaaatgtt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38370816 agtatttttcattttctaacctgtgttcattttgacttgctaatgagaagatacgagactcgtaaaatgaaccgttgtaatgtagagaaaatgaaatgtt 38370717  T
Q  343 agctaagcgat-atgcaattttgaaaataatgaaaacaattcttttggcattttcattaactccacttcaagagtctgttatctctttgattgcaagtaa 441  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  38370716 agctaagcgatgatgcaattttgaaaataatgaaaacaattcttttggcattttcattaattccacttcaagagtctgttatctctttgatagcaagtaa 38370617  T
Q  442 aattaatcctcagggttgtcgtttttgtatattgctatacacgctaatgagtttcgaatgtggtagagtttgagtgtgtttgtttgtttga 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38370616 aattaatcctcagggttgtcgtttttgtatattgctatacacgctaatgagtttcgaatgtggtagagtttgagtgtgtttatttgtttga 38370526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 31810432 - 31810481
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  31810432 tgaatctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 31810481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 12736372 - 12736423
Alignment:
Q  141 aagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatt 192  Q
    ||||||||||| |||| ||||||||||||||||| | ||||||||| |||||    
T  12736372 aagcaaaaaactactttttaggttcattgaatgattgatgtatgtgatcatt 12736423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 27518413 - 27518456
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||    
T  27518413 tgaatctaaaatgtagatttttgtttataatagtgaccggaggg 27518456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 31505080 - 31505030
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtattt 249  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||||    
T  31505080 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtattt 31505030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 40098799 - 40098753
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    ||||||||||||| |||||| ||||| |||||||||||||| |||||    
T  40098799 atctaaaaagtagatttttgcttatattagtgaccggagggtgtatt 40098753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 12736402 - 12736357
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccgga 239  Q
    |||| |||| |||||||||||||||||| |||||||||| ||||||    
T  12736402 ttcaatgaacctaaaaagtagttttttgcttataatagtaaccgga 12736357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 24052921 - 24052966
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccgga 239  Q
    |||| |||| ||||||||||| |||||| |||||||||||||||||    
T  24052921 ttcaatgaacctaaaaagtagatttttgtttataatagtgaccgga 24052966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 24820302 - 24820362
Alignment:
Q  128 tggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggt 188  Q
    |||||||| ||| |||||||||  ||||||||||||||||| ||| | | |||||||||||    
T  24820302 tggtcactattataagcaaaaattcacttcttaggttcattcaataaatgatgtatgtggt 24820362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 31505136 - 31505184
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  31505136 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 31505184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 31810376 - 31810328
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||| ||||    
T  31810376 tgaatctaaaatgtagcattttgcttataatagtgaccggagggtgtat 31810328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 41387860 - 41387900
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccgga 239  Q
    |||||||||||  |||||||||| |||||||||||||||||    
T  41387860 tgaatctaaaatatagttttttgcttataatagtgaccgga 41387900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 34762945 - 34763182
Alignment:
Q  12 ctgttgccacagctgtggaatctgtccctgcagagaagaaatcctgcaaacaaaggaatttaacttagcatataatggatagagaaaatcttatctaaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34762945 ctgttgccacagctgtggaatctgtccctgcagagaagaaatcctgcaaacaaaggaatttaacttagcatataatggagagagaaaatcttatctaaaa 34763044  T
Q  112 tgtaatatactctcattggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtca-tttttcagtgaatctaaaaa 210  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||    
T  34763045 tgtaatatactctcatcggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatggatgtggtcattttttcagtgaacctaaaaa 34763144  T
Q  211 gtag-ttttttggttataatagtgaccggagggagtat 247  Q
     ||| ||||||| |||||||||||||||||||||||||    
T  34763145 atagtttttttgattataatagtgaccggagggagtat 34763182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 2198087 - 2198036
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtatttttca 253  Q
    ||||||||||| |  ||||| |||||||||||||||||||||||||||||||    
T  2198087 atctaaaaagtggagttttgcttataatagtgaccggagggagtatttttca 2198036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 54164911 - 54164961
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtattt 249  Q
    |||||||||||| ||| |||||| |||||||||||||||||||| ||||||    
T  54164911 tgaatctaaaaaatagatttttgcttataatagtgaccggagggtgtattt 54164961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 22235353 - 22235406
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| ||||||||||| ||  ||||||| |||||||||||||||||||||||||    
T  22235353 ttcaatgaatctaaaatgtgattttttgcttataatagtgaccggagggagtat 22235406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 34754962 - 34755007
Alignment:
Q  14 gttgccacagctgtggaatctgtccctgcagagaagaaatcctgca 59  Q
    |||| |||||| |||||||||||||| |||||||||||||||||||    
T  34754962 gttgacacagccgtggaatctgtccccgcagagaagaaatcctgca 34755007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 31933689 - 31933642
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||||    
T  31933689 tgaatctaaaaagtagaaatttgcttataatagtgaccggagggagta 31933642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 56328548 - 56328591
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||    
T  56328548 tgaatctaaaatgtagttttttgcttatattagtgaccggaggg 56328591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 3094382 - 3094412
Alignment:
Q  217 ttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||||||||||||||||||||||    
T  3094382 ttttggttataatagtgaccggagggagtat 3094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 23614498 - 23614415
Alignment:
Q  141 aagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatttttcagtgaatctaaaaagtagttttttggttataa 228  Q
    |||||||||||||||| ||||||||||||||    |||||||| |||||    |||| |||| ||||||||| |||||||| ||||||    
T  23614498 aagcaaaaaaccactttttaggttcattgaacacctaatgtatttggtc----ttcaatgaacctaaaaagtggttttttgcttataa 23614415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 39160912 - 39160954
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagg 241  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  39160912 tgaatctaaaatgtagatttttgtttataatagtgaccggagg 39160954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 56257428 - 56257482
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    |||| |||||||||||||||  |||||  |||||||||||||||||| |||||||    
T  56257428 ttcaatgaatctaaaaagtaactttttacttataatagtgaccggagagagtatt 56257482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 21224783 - 21224832
Alignment:
Q  199 tgaatctaaaaagtagttttttggtt-ataatagtgaccggagggagtat 247  Q
    ||||||||||| |||||||||| ||| |||||||||||||||||| ||||    
T  21224783 tgaatctaaaatgtagtttttttgtttataatagtgaccggagggtgtat 21224832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 14450999 - 14450951
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| |||| |||||| |||||||||||| ||||||| ||||    
T  14450999 tgaatctaaaatgtagatttttgcttataatagtgatcggagggtgtat 14450951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 19934680 - 19934632
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||||| |  ||||| |||||||||||||||||||| ||||    
T  19934680 tgaatctaaaaagtggaattttgcttataatagtgaccggagggtgtat 19934632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 19934736 - 19934784
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||| ||| |||||| |||||||||||| ||||||| ||||    
T  19934736 tgaatctaaaaaatagatttttgcttataatagtgatcggagggtgtat 19934784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 22720607 - 22720651
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||||||||| |  ||||| ||||||||||||||||||||||||    
T  22720607 atctaaaaagtggagttttgcttataatagtgaccggagggagta 22720651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 29006877 - 29006837
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccgga 239  Q
    |||||||||||| ||| |||||| |||||||||||||||||    
T  29006877 tgaatctaaaaaatagatttttgcttataatagtgaccgga 29006837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 54164855 - 54164807
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||||| |  ||||| |||||||||||||||||||| ||||    
T  54164855 tgaatctaaaaagtggaattttgcttataatagtgaccggagggtgtat 54164807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 54713140 - 54713092
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| |||  |||||| |||||||||||||||||||| ||||    
T  54713140 tgaatctaaaatgtaaatttttgcttataatagtgaccggagggtgtat 54713092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 39682013 - 39681882
Alignment:
Q  267 gttcattttgacttgctaatgagaagatacgagactcgtaaaatgaaccgttgtgatgtagagaaaatgaaatgttagctaagcgat-atgcaattttga 365  Q
    ||||||||| |||||||||| ||||||| |||||||| ||||||||||| |||||||| |||||| |||||||| ||| | |  ||| ||||| ||||||    
T  39682013 gttcattttaacttgctaataagaagatgcgagactcttaaaatgaaccattgtgatggagagaagatgaaatgctag-ttatagatgatgcatttttga 39681915  T
Q  366 aaataatgaaaacaattcttttggcattttcatt 399  Q
    ||||||||| ||  | ||||||||||||||||||    
T  39681914 aaataatgagaa-tagtcttttggcattttcatt 39681882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 2456674 - 2456726
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    |||| ||||||||||||||||||||||  |||||||||||||| |||||||||    
T  2456674 ttcaatgaatctaaaaagtagttttttacttataatagtgaccagagggagta 2456726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 3967752 - 3967700
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    |||| |||| |||||||||||||||||| |||||||||||| |||||||||||    
T  3967752 ttcaatgaacctaaaaagtagttttttgcttataatagtgatcggagggagta 3967700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 34750371 - 34750321
Alignment:
Q  198 gtgaatctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    ||||| ||||||||||| |||||| |||||||||| |||||||||||||||    
T  34750371 gtgaacctaaaaagtagatttttgcttataatagtaaccggagggagtatt 34750321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 2456383 - 2456330
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| |||| ||||||||||| |||||| |||||||||||| ||||||||||||    
T  2456383 ttcaatgaacctaaaaagtagatttttgcttataatagtgatcggagggagtat 2456330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 47535006 - 47534965
Alignment:
Q  205 taaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  47535006 taaaaagtagttttttgcttataatagtgaccggagagagta 47534965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 47708408 - 47708469
Alignment:
Q  131 tcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatt 192  Q
    ||||| ||| ||||||||||| |||| ||| ||||||||||||||| |||||||| ||||||    
T  47708408 tcactattataagcaaaaaactactttttaagttcattgaatgagtgatgtatgttgtcatt 47708469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 3967798 - 3967842
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccgg 238  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||    
T  3967798 ttcaatgaacctaaaaagtagttttttgcttataatagtgaccgg 3967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 3967712 - 3967763
Alignment:
Q  131 tcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgta 182  Q
    ||||| ||| ||||||||||| |||| ||||||||||||||||||| |||||    
T  3967712 tcactattataagcaaaaaactactttttaggttcattgaatgagtgatgta 3967763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 8127925 - 8127972
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    |||||||||| ||| | |||||| ||||||||||||||||||||||||    
T  8127925 tgaatctaaacagttgatttttgtttataatagtgaccggagggagta 8127972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 3967840 - 3967782
Alignment:
Q  129 ggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtgg 187  Q
    ||||||| ||| ||||||||||| |||| ||||||||||||||| | | ||||||||||    
T  3967840 ggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgtgg 3967782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 28306357 - 28306319
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccg 237  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  28306357 tgaatctaaaatgtagatttttggttataatagtgaccg 28306319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 34750432 - 34750474
Alignment:
Q  205 taaaaagtagttttttgg-ttataatagtgaccggagggagta 246  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  34750432 taaaaagtagtttttttgcttataatagtgaccggagggagta 34750474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 12274907 - 12274956
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    |||||||||||||||  |||||| |||||||||| ||||||||| |||||    
T  12274907 tgaatctaaaaagtacatttttgcttataatagttaccggagggtgtatt 12274956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 25079308 - 25079357
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtattttt 251  Q
    ||||||||||||| |||||| ||||| |||||||||||||  ||||||||    
T  25079308 atctaaaaagtagatttttgtttatattagtgaccggaggatgtattttt 25079357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 38238885 - 38238930
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  38238885 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 38238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 41803762 - 41803721
Alignment:
Q  201 aatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  41803762 aatctaaaatgtagattttttgttataatagtgaccggaggg 41803721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 47708437 - 47708396
Alignment:
Q  205 taaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||||||||||||||| |||||||||||| |||| ||||||    
T  47708437 taaaaagtagttttttgcttataatagtgatcggatggagta 47708396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 7701230 - 7701190
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccgga 239  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  7701230 tgaatctaaaatgtagatttttgcttataatagtgaccgga 7701190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 10414981 - 10414933
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  10414981 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 10414933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 25245241 - 25245289
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| || | |||||| |||||||||||||||||||| ||||    
T  25245241 tgaatctaaaatgttgatttttgcttataatagtgaccggagggtgtat 25245289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 34565046 - 34565002
Alignment:
Q  145 aaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtc 189  Q
    |||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  34565046 aaaaaaccactttttaggttaattgaataagtgatgtatgtggtc 34565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 39964342 - 39964290
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  39964342 ttcaatgaatctaaaaagtagttttttgcttataataatgaccggagggagta 39964290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 9170154 - 9170106
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| ||||    
T  9170154 tgaatctaaaatgtaattttttgcttataatagtgaccggagggtgtat 9170106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 8504892 - 8504849
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||    
T  8504892 tgaatctaaaatgtagatttttgcttataatagtgaccggaggg 8504849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 21217208 - 21217166
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagg 241  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  21217208 tgaatctaaaatgtagatttttgcttataatagtgaccggagg 21217166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 24075489 - 24075447
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagg 241  Q
    ||||||||||| || |||||||| |||||||||||||||||||    
T  24075489 tgaatctaaaatgttgttttttgcttataatagtgaccggagg 24075447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 51617370 - 51617324
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    ||||||||||| | |||||||||||| |||||||||||||| |||||    
T  51617370 atctaaaaagtggatttttggttatattagtgaccggagggtgtatt 51617324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 26331308 - 26331361
Alignment:
Q  193 tttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||| |||| ||||||||| |||||||| ||||||  ||||||||||||||||    
T  26331308 tttcaatgaacctaaaaagttgttttttgcttataaatgtgaccggagggagta 26331361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 27786499 - 27786450
Alignment:
Q  198 gtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||| |||||||||||||||||| ||||||  ||||||| |||||||||    
T  27786499 gtgaacctaaaaagtagttttttgcttataaatgtgaccgaagggagtat 27786450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 39682701 - 39682754
Alignment:
Q  193 tttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||| |||| ||||||| |||||||||  |||||||| |||||||||||||||    
T  39682701 tttcaatgaacctaaaaaatagttttttatttataataatgaccggagggagta 39682754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 52215976 - 52216021
Alignment:
Q  197 agtgaatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||||||| || | |||||| ||||||||||||||||||||    
T  52215976 agtgaatctaaaatgttgatttttgcttataatagtgaccggaggg 52216021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 39579591 - 39579639
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||||| | |||||| |||||||||||| || |||||||||    
T  39579591 tgaatctaaaaagttgatttttgcttataatagtgatcgaagggagtat 39579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 50626824 - 50626764
Alignment:
Q  129 ggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtc 189  Q
    ||||||| ||| |||||| |||||||||  |||||||||||||| | |||||||| |||||    
T  50626824 ggtcactattataagcaacaaaccactttataggttcattgaataactaatgtatctggtc 50626764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 387
Target Start/End: Complemental strand, 12574117 - 12573996
Alignment:
Q  266 tgttcattttgacttgctaatgagaagatacgagactcgtaaaatgaaccgttgtgatgtagagaaaatgaaatgttagctaagcgat-atgcaattttg 364  Q
    |||||||||| |||||||||| |  ||||  ||||||| | || |||||| |||||||| |||||| |||||||| |||||| | ||| ||||| || ||    
T  12574117 tgttcattttaacttgctaataattagatgtgagactcttgaagtgaaccattgtgatggagagaagatgaaatgctagctatg-gatgatgcatttatg 12574019  T
Q  365 aaaataatgaaaacaattctttt 387  Q
     ||||||||||||||||||||||    
T  12574018 gaaataatgaaaacaattctttt 12573996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 5259483 - 5259535
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtattttt 251  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||    
T  5259483 tgaatctaaaatgtagttttttgcttatattagtgaccggagggtgtactttt 5259535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 42910815 - 42910858
Alignment:
Q  204 ctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||| ||||  |||||||||||||||||||||||||    
T  42910815 ctaaaaagtagtattttacttataatagtgaccggagggagtat 42910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 25792944 - 25792989
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggag 244  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||    
T  25792944 tgaacctaaaaagtaaatttttgcttataatagtgaccggagggag 25792989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 71301 - 71249
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtattttt 251  Q
    |||||||||||  ||| |||||| |||||||||||||||||||| ||| ||||    
T  71301 tgaatctaaaatatagatttttgcttataatagtgaccggagggtgtagtttt 71249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 1098725 - 1098773
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||| ||   ||||| |||||||||||||||||||||||||    
T  1098725 tgaatctaaaaaataaacttttgcttataatagtgaccggagggagtat 1098773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 10437735 - 10437783
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| || | |||||| |||||||||||||||||||| ||||    
T  10437735 tgaatctaaaatgttgatttttgcttataatagtgaccggagggtgtat 10437783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 15549423 - 15549471
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| || | |||||| |||||||||||||||||||| ||||    
T  15549423 tgaatctaaaatgttgatttttgtttataatagtgaccggagggtgtat 15549471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 18033455 - 18033495
Alignment:
Q  201 aatctaaaaagtagttttttggttataatagtgaccggagg 241  Q
    ||||||||| |||| |||||| |||||||||||||||||||    
T  18033455 aatctaaaatgtagatttttgcttataatagtgaccggagg 18033495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 41180311 - 41180359
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  41180311 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 41180359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 248 - 392
Target Start/End: Original strand, 38216941 - 38217089
Alignment:
Q  248 ttttcattttctaac--ctgtgttcattttgacttgctaatgagaagatacgagactcgtaaaatgaaccgttgtgatgtagagaaaatgaaatgttagc 345  Q
    ||||||||||||||   ||||||| ||||| || || || | ||||||| |||||||| | |||| |||| |||||||| |||||| |||||||| |||     
T  38216941 ttttcattttctaaaatctgtgtttattttaacatggtagtaagaagatgcgagactcttgaaatcaaccattgtgatggagagaagatgaaatgctagt 38217040  T
Q  346 taagc--gatatgcaattttgaaaataatgaaaacaattcttttggcat 392  Q
    || |   |  ||||| ||||| |||||||||||||||||||||||||||    
T  38217041 taggaatgtgatgcatttttggaaataatgaaaacaattcttttggcat 38217089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 44587778 - 44587716
Alignment:
Q  129 ggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcat 191  Q
    ||||||| ||| ||||||||||| |||| |||| |||||||||||||| ||||||||||||||    
T  44587778 ggtcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcat 44587716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 44587736 - 44587778
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgacc 236  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  44587736 ttcaatgaatctaaaaagtagttttttgcttataatagtgacc 44587778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 26283894 - 26283975
Alignment:
Q  268 ttcattttgacttgctaatgagaagatacgagactcgtaaaatgaaccgttgtgatgtagagaaaatgaaatgttagctaag 349  Q
    |||||||| | ||| |||| ||||||| |||||||| | |||||||||||||||||  |||||| |||||||| ||| ||||    
T  26283894 ttcattttaatttgttaataagaagatgcgagactcttgaaatgaaccgttgtgatcgagagaagatgaaatgctagttaag 26283975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 44587690 - 44587635
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtattt 249  Q
    |||| |||| ||||||| |||| ||||| |||||||| ||||||||||||||||||    
T  44587690 ttcaatgaacctaaaaaatagtattttgcttataataatgaccggagggagtattt 44587635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 3098224 - 3098266
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagg 241  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  3098224 tgaatctaaaatgtagatttttgcttataatagtgaccggagg 3098266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 23143530 - 23143480
Alignment:
Q  197 agtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||| ||||||||| | |||||| ||||||||||||||| |||||||||    
T  23143530 agtgaacctaaaaagttgatttttgcttataatagtgaccgaagggagtat 23143480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 23143589 - 23143631
Alignment:
Q  204 ctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  23143589 ctaaaaagttgatttttgcttataatagtgaccggagggagta 23143631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 23555320 - 23555270
Alignment:
Q  197 agtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||| ||||||||| | |||||| ||||||||||||||| |||||||||    
T  23555320 agtgaacctaaaaagttgatttttgcttataatagtgaccgaagggagtat 23555270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 23555379 - 23555421
Alignment:
Q  204 ctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  23555379 ctaaaaagttgatttttgcttataatagtgaccggagggagta 23555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 25270954 - 25270996
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagg 241  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  25270954 tgaatctaaaatgtagatttttgcttataatagtgaccggagg 25270996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 399
Target Start/End: Original strand, 39942232 - 39942364
Alignment:
Q  264 tgtgttcattttgacttgctaatgagaagatacgagactcgtaaaatgaaccgttgtgatgtagagaaaatgaaatgttagctaagcgat-atgcaattt 362  Q
    |||||||||||| |||| |||||   || || |||||||| | || |||||| |||||||| | ||||  ||||||| |||||| | ||| ||||| ||     
T  39942232 tgtgttcattttaactttctaat---aaaatgcgagactcatgaagtgaaccattgtgatggaaagaatgtgaaatgctagctagg-gatgatgcatttc 39942327  T
Q  363 tgaaaataatgaaaacaattcttttggcattttcatt 399  Q
    || ||||||||||||||| |||| |||||||||||||    
T  39942328 tggaaataatgaaaacaactcttgtggcattttcatt 39942364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 5574211 - 5574256
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  5574211 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 5574256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 15119877 - 15119918
Alignment:
Q  201 aatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||| |||| |||||| ||||||||||||||||||||    
T  15119877 aatctaaaatgtagatttttgcttataatagtgaccggaggg 15119918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 20218639 - 20218692
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| ||||||||||||||  ||| ||| ||||||||||||| |||||||||||    
T  20218639 ttcaatgaatctaaaaagtgatttcttgcttataatagtgacaggagggagtat 20218692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 38181858 - 38181907
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||| |||||    
T  38181858 tgaatgtaaaatgtagttttttgcttataatagtaaccggagggtgtatt 38181907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 38227239 - 38227198
Alignment:
Q  201 aatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    |||||||||||| |||||||| |||||||| |||||||||||    
T  38227239 aatctaaaaagtggttttttgcttataataatgaccggaggg 38227198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 3121523 - 3121563
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    |||||||| |||| |||||| ||||||||||||||||||||    
T  3121523 atctaaaatgtagatttttgcttataatagtgaccggaggg 3121563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 13333545 - 13333585
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccgga 239  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  13333545 tgaatctaaaatgtagatttttgcttataatagtgaccgga 13333585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 20218593 - 20218541
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    |||| |||| |||||||||  ||||||| ||||||||||||| ||||||||||    
T  20218593 ttcaatgaaactaaaaagtgtttttttgcttataatagtgactggagggagta 20218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 40363266 - 40363226
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtga 234  Q
    |||| |||| |||||||||||||||||| ||||||||||||    
T  40363266 ttcaatgaacctaaaaagtagttttttgcttataatagtga 40363226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 15057664 - 15057725
Alignment:
Q  131 tcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatt 192  Q
    ||||| ||| ||||||||||| |||| |||| |||||||||||||| |||||||||||||||    
T  15057664 tcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcatt 15057725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 15057704 - 15057657
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagg 241  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  15057704 ttcaatgaatctaaaaagtagttttttgcttataatagtgatcggagg 15057657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 5091763 - 5091828
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtatttttcattttct 259  Q
    |||| |||| |||||| ||||||||||| |||||||||||||| || ||||||| | |||||||||    
T  5091763 ttcaatgaacctaaaaggtagttttttgtttataatagtgacctgaaggagtatatatcattttct 5091828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 38636325 - 38636223
Alignment:
Q  141 aagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatttttcagtgaatctaaaaagtagttttttggttataatagtgaccggag 240  Q
    ||||||||||| |||| |||| || ||||||| | |||||||| ||||     |||| |||||||||||||| |||||||| ||||||  ||||| ||||    
T  38636325 aagcaaaaaacaactttttagattgattgaataactaatgtatttggta----ttcaatgaatctaaaaagttgttttttgcttataaatgtgacaggag 38636230  T
Q  241 ggagtat 247  Q
    |||||||    
T  38636229 ggagtat 38636223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 19175686 - 19175734
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||||||| |||||| ||||||||||||| |||||| ||||    
T  19175686 tgaatctaaaaagtagatttttgcttataatagtgactggagggtgtat 19175734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 38834653 - 38834605
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||| ||  |||||| |||||||||||||||||||||||||    
T  38834653 tgaatctaaaaaataaatttttgcttataatagtgaccggagggagtat 38834605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 45115268 - 45115316
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| |||| |||||| |||||||||||||||||||| ||||    
T  45115268 tgaatctaaaatgtagatttttgcttataatagtgaccggagggtgtat 45115316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 8338717 - 8338674
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||    
T  8338717 tgaatctaaaatgtagatttttgcttataatagtgaccggaggg 8338674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 17468191 - 17468246
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtattt 249  Q
    |||| |||||||||||||| || ||||| || ||||||||||| ||||||||||||    
T  17468191 ttcaatgaatctaaaaagtggtattttgcttttaatagtgaccagagggagtattt 17468246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 38758398 - 38758445
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagta 246  Q
    |||| |||||||||  ||||||| ||||||||||||||||||||||||    
T  38758398 tgaacctaaaaagtgtttttttgcttataatagtgaccggagggagta 38758445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 24419580 - 24419527
Alignment:
Q  194 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| ||||||||||||||  ||||||| ||||||  |||||||||||||||||    
T  24419580 ttcaatgaatctaaaaagttcttttttgcttataaatgtgaccggagggagtat 24419527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 28725564 - 28725613
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| |||||    
T  28725564 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 28725613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 31008298 - 31008253
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  31008298 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 31008253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 4060272 - 4060312
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggaggg 242  Q
    ||||||||||||| |||||| ||||| ||||||||||||||    
T  4060272 atctaaaaagtagatttttgcttatattagtgaccggaggg 4060312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 6156676 - 6156628
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||||| | |||||| |||||||||||| |||| |||||||    
T  6156676 tgaatctaaaaagttgatttttgtttataatagtgatcggaaggagtat 6156628  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 14214627 - 14214675
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| ||||||||||  |||||| |||||||||||||||||||| ||||    
T  14214627 tgaacctaaaaagtaagtttttgcttataatagtgaccggagggtgtat 14214675  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 36040188 - 36040140
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  36040188 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 36040140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 36040244 - 36040292
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  36040244 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 36040292  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 16121063 - 16121111
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||||||||||||| | |||||| |||||||||||| ||||||||||||    
T  16121063 tgaatctaaaaagttgatttttgcttataatagtgatcggagggagtat 16121111  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 6560699 - 6560649
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtattt 249  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||||    
T  6560699 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtattt 6560649  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 17773602 - 17773648
Alignment:
Q  202 atctaaaaagtagttttttggttataatagtgaccggagggagtatt 248  Q
    ||||||||||||| |||||| ||||| |||||||||||||| |||||    
T  17773602 atctaaaaagtagatttttgcttatattagtgaccggagggtgtatt 17773648  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 3203713 - 3203665
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    |||| ||||||| | | |||||| |||||||||||||||||||||||||    
T  3203713 tgaacctaaaaaattgatttttgcttataatagtgaccggagggagtat 3203665  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 8146047 - 8146095
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 247  Q
    ||||||||||| ||| ||||||| ||||| |||||||||||||| ||||    
T  8146047 tgaatctaaaatgtaattttttgcttatattagtgaccggagggtgtat 8146095  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 18097170 - 18097210
Alignment:
Q  211 gtagttttttggttataatagtgaccggagggagtattttt 251  Q
    ||||||||||| ||||| |||||||||||||| ||||||||    
T  18097170 gtagttttttgtttatattagtgaccggagggtgtattttt 18097210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 31398268 - 31398216
Alignment:
Q  199 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtattttt 251  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||| ||||    
T  31398268 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtagtttt 31398216  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 31632229 - 31632261
Alignment:
Q  223 ttataatagtgaccggagggagtatttttcatt 255  Q
    ||||||||||||||||||||||||||| |||||    
T  31632229 ttataatagtgaccggagggagtatttatcatt 31632261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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