View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_185 (Length: 220)
Name: NF1145_low_185
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_185 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 11437013 - 11437098
Alignment:
| Q |
15 |
catagggtggaaaaagtaatagtttaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
100 |
Q |
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| T |
11437013 |
catagggtggaaaaagtaatagtctaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
11437098 |
T |
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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 11437198 - 11437258
Alignment:
| Q |
118 |
ttcagtggtctttctagcatgccaaatgacgaatcaaaatacctaccaacataaagtgaag |
178 |
Q |
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| T |
11437198 |
ttcagtggtctttctaccatgccaaatgactaatcaaaatacctaccaacataaagtgaag |
11437258 |
T |
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