View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_19 (Length: 547)
Name: NF1145_low_19
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 23 - 473
Target Start/End: Complemental strand, 51197493 - 51197043
Alignment:
| Q |
23 |
atgaatggcgattgaatatgctaaccggagaggttaaggagaaagatctttgtggtaacaaacttgtttatatggattttcctatgatcaatgaaaactt |
122 |
Q |
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| T |
51197493 |
atgaatggcgattgaatatgctaaccggagaggttaaggagaaagatctttgtggtaacaaacttgtttatatggattttcctatgatcaatgaaaactt |
51197394 |
T |
|
| Q |
123 |
tgttggtgttaagcatagatatgcatacacacaagtagttgatcctacaagctctaccactcaaggtaattaccagtttattctttatccagagaattgt |
222 |
Q |
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| T |
51197393 |
tgttggtgttaagcatagatatgcatacacacaagtagttgatcctacaagctctaccactcaaggtaattaccagtttattctttatccagagcattgt |
51197294 |
T |
|
| Q |
223 |
aacatgtaattagcctttcatactttctatataaatatttataatatggttttgttcttgtgctatttagatgtgccaaaatatagaggtatagctaagc |
322 |
Q |
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| T |
51197293 |
aacatgtaattagcctttcatactttctatataaatatttataatatggttttgttcttgtgctatttagatgtgccaaaatatagaggtatagctaagc |
51197194 |
T |
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| Q |
323 |
tatacttagaagaaacatgtgctgaattctctatgtcaaaggtaaaagaatgctataattaacaattcctttccctagtggtaatttcatataattcctt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51197193 |
tatacttagaagaaacatgtgctgaattctctatgtcaaaggtaaaagaatgctataattaacaattcctttccctagtggtaatttcatataattcctt |
51197094 |
T |
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| Q |
423 |
agtagcattattatcagtgtcataacatagattttttgaagcagagagaaa |
473 |
Q |
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| T |
51197093 |
agtagcattattatcagtgtcataacatagattttttgaagcagagagaaa |
51197043 |
T |
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