View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_198 (Length: 201)
Name: NF1145_low_198
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_198 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 31132466 - 31132348
Alignment:
| Q |
1 |
agcttgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31132466 |
agcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactcagcccaa |
31132367 |
T |
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| Q |
101 |
tcggatccccatatattct |
119 |
Q |
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|||||||||||||| |||| |
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| T |
31132366 |
tcggatccccatattttct |
31132348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 31127754 - 31127640
Alignment:
| Q |
5 |
tgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaatcgg |
104 |
Q |
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|||||||||| |||| |||||||||||||||||| ||||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
31127754 |
tgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgg |
31127655 |
T |
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| Q |
105 |
atccccatatattct |
119 |
Q |
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| T |
31127654 |
gtccccatattttct |
31127640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 31078440 - 31078317
Alignment:
| Q |
1 |
agcttgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaa |
100 |
Q |
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|||||||||||||| |||| |||||||||||||||||| ||| ||||| || ||||| ||| || |||||||||||||||| |||||||||||||||||| |
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| T |
31078440 |
agcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaa |
31078341 |
T |
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| Q |
101 |
tcggatccccatatattcttcgac |
124 |
Q |
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|| ||||||||| |||| |||| |
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| T |
31078340 |
tcaagtccccatattttctccgac |
31078317 |
T |
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