View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_2 (Length: 860)
Name: NF1145_low_2
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_2 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 95 - 681
Target Start/End: Complemental strand, 10909887 - 10909288
Alignment:
| Q |
95 |
ggccaggctcaaacatttgttgggttatgattggggggttgctggaggcttcatatcagatgtaagttagttaca-------------ctagttagttaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
10909887 |
ggccaggctcaaacatttgttgggttatgattggggggttgctggaggcttcatattaaatgtaagttagttacaataattagttacactagttagttaa |
10909788 |
T |
|
| Q |
182 |
gttagattgattaaaataaactaagagaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatctgtgtaaatacacccgcggg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10909787 |
gttagattgattaaaataaactaagagaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatcggtgtaaatacacccgcggg |
10909688 |
T |
|
| Q |
282 |
ggtgtggaatggtttgtggagatggcttggtttatccttggtgttacctcataatctgttcttgttgtgggagggttggagtggtgctgcgaggaataat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10909687 |
ggtgtggaatggtttgtggagatggcttggtttttccttggtgttacctcataatctgttcttgttgtgggagggttggaatggtgctgcgaggaataat |
10909588 |
T |
|
| Q |
382 |
aagattcatagaggttttcggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgttg |
481 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909587 |
aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgttg |
10909488 |
T |
|
| Q |
482 |
ctgagatagtggaggtgattaaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaa |
581 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909487 |
ctgagatattggaggcgattaaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaa |
10909388 |
T |
|
| Q |
582 |
agagtgtcttttgcgttcacgatgcagttttttgtggcatcttagcattgtaatggttgaggctggggtatgctgcgtttttttgctgttagcagtgctg |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909387 |
agagtgtcttttgcgttcacgatgcagttttttgtggcatcttagcattgtaatggttgaggctggggtatgctgcgtttttttgctgttagcagtgctg |
10909288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 731 - 850
Target Start/End: Complemental strand, 10909277 - 10909154
Alignment:
| Q |
731 |
cttctggtgctggtctgctttttgggcttgctgttaacgtttttagactaggaggttcctactgtttagagcttttttgcggagtttttcaggttgtgg- |
829 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909277 |
cttctggtgctggtctgctttttgggcttgctgttaacgtttttagactaggaggttcctgctgtttagagcttttttgcggagtttttcaggttgtggg |
10909178 |
T |
|
| Q |
830 |
---gctggtatagcagtgcctttg |
850 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
10909177 |
gttgctggtatagcattgcctttg |
10909154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 501 - 588
Target Start/End: Complemental strand, 29570554 - 29570467
Alignment:
| Q |
501 |
taaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaaagagtgt |
588 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| | ||| ||| || |||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
29570554 |
taaggttttgtcttggaggtggactttgagtagtttcaatttgcgggcatgtttgttttatgaatggagttggaacccaaaagggtgt |
29570467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 27753790 - 27753851
Alignment:
| Q |
400 |
cggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaa |
461 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
27753790 |
cggttgatttggcacgccgtagtgtggaatttatggagggtgagaaatgaccgaattttcaa |
27753851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 95 - 797
Target Start/End: Original strand, 13725542 - 13726250
Alignment:
| Q |
95 |
ggccaggctcaaacatttgttgggttatgattggggggttgctggaggcttcatatcagatgtaagttag-------------ttacactagttagttaa |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
13725542 |
ggccaggctcaaacatttgttgggttatgattgggggattgctggaggcttcatattagatgtaagttagttacaataattagttacactagttagttaa |
13725641 |
T |
|
| Q |
182 |
gttagattgattaaaataaactaagagaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatctgtgtaaatacacccgcggg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13725642 |
gttagattgattaaaataaactaagagaaagatgaactttagagctgaaatgaaagaatgagaaaaagttgattacaatcggtgtaaatacacccgcggg |
13725741 |
T |
|
| Q |
282 |
ggtgtggaatggtttgtggagatggcttggtttatccttggtgttacctcataatctgttcttgttgtgggagggttggagtggtgctgcgaggaataat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
13725742 |
ggtgtggaatggtttgtggagatggcttggtttttccttggtgttacctcataatatgttcttgttatgggagggttggaatggtgctgcgaggaataat |
13725841 |
T |
|
| Q |
382 |
aagattcatagaggttttcggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgttg |
481 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13725842 |
aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaataattctaattgtgatgttg |
13725941 |
T |
|
| Q |
482 |
ctgagatagtggaggtgattaaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaa |
581 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
13725942 |
ctgagatagtggaggcaattaaggtttttccgtggaggtggactttgagtcgtttacaagtgtcggcttgcttgttttatgaatggagttggaatctaaa |
13726041 |
T |
|
| Q |
582 |
agagtgtcttttgcgttcacgatgcagttttttgtggcatcttagcattgtaatggttgagg--ctggggtatgctgcgtttttttgctgttagcagtgc |
679 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
13726042 |
agagtgtcttttgcgttgacggtgcagttttttgtg--------gcattgtaagggttgaggctctggagtatgctgcgtttttttgctgttagccgtgc |
13726133 |
T |
|
| Q |
680 |
tgnnnnnnnnnctttctgctatttggcatatggcagcctcaannnnnnnnncttctggtgctggtctgctttttgggcttgctgttaacgtttttagact |
779 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13726134 |
tgtttttttttc-ttctgctatttggcatatggcagcctctattttttgtttttctggtgctggtctgctttttgggcttgttgttaacgtttttagact |
13726232 |
T |
|
| Q |
780 |
aggaggttcctactgttt |
797 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
13726233 |
aggaggttcctgctgttt |
13726250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 649 - 850
Target Start/End: Original strand, 13746004 - 13746208
Alignment:
| Q |
649 |
gtatgctgcgtttttttgctgttagcagtgctgnnnnnnnnnctttctgctatttggcatatggcagcctcaannnnnnnnncttctggtgctggtctgc |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||||| ||| |
|
|
| T |
13746004 |
gtatgctgcgtttttttgctgttagcagtgctatttttttttctt-ctgctatttgccatatggcagcctcaattttttgtttttctggtgctggtatgc |
13746102 |
T |
|
| Q |
749 |
tttttgggcttgctgttaacgtttttagactaggaggttcctactgtttagagcttttttgcggagtttttcaggttgtgg----gctggtatagcagtg |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13746103 |
tttttgggcttgctgttaacgtttttagactaggaggttcctgctgtttagagcttttttggggagtttttcaggttgtggggttgctggtatagcagtg |
13746202 |
T |
|
| Q |
845 |
cctttg |
850 |
Q |
| |
|
|||||| |
|
|
| T |
13746203 |
cctttg |
13746208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 536
Target Start/End: Original strand, 26728799 - 26728942
Alignment:
| Q |
393 |
aggttttcggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgttgctgagatagtg |
492 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| ||||| ||||||||| ||||||||| |||||||| || ||||| ||||||| || | ||||| || |
|
|
| T |
26728799 |
aggttttcgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttttaacaattcaaattgtggggtggaggagattctg |
26728898 |
T |
|
| Q |
493 |
gaggtgattaaggttttgtcgtggaggtggactttgagtcgttt |
536 |
Q |
| |
|
|||| || || || |||||||||| |||||||| |||||||| |
|
|
| T |
26728899 |
gaggctatgaaagtgctgtcgtggagatggactttaagtcgttt |
26728942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 596
Target Start/End: Original strand, 29083140 - 29083234
Alignment:
| Q |
502 |
aaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaaagagtgtcttttgcg |
596 |
Q |
| |
|
|||||| |||||||||| ||||| |||| |||| | | | |||| ||||||||||||||||||| ||||||| |||||||| || |||||||| |
|
|
| T |
29083140 |
aaggttctgtcgtggagatggacattgactcgtgtcaaggcgccgacttgcttgttttatgaatggtgttggaacccaaaagaatgccttttgcg |
29083234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 28572178 - 28572227
Alignment:
| Q |
542 |
tgccggcttgcttgttttatgaatgaagttggaatccaaaagagtgtctt |
591 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
28572178 |
tgccgacttgcttgttttatgaatggagttggaacccaaaaaagtgtctt |
28572227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 502 - 584
Target Start/End: Original strand, 41029640 - 41029722
Alignment:
| Q |
502 |
aaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaaaga |
584 |
Q |
| |
|
||||||| | ||||||| ||| |||||||||| || | ||| ||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
41029640 |
aaggtttggccgtggagatggtctttgagtcggttgaaggtgacggcttgtttgttttatgaatggtgttggaacccaaaaga |
41029722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 596
Target Start/End: Complemental strand, 26697891 - 26697779
Alignment:
| Q |
484 |
gagatagtggaggtgattaaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaatgaagttggaatccaaaag |
583 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| ||||||||| || | |||||||||| |||||||| ||||| | |||||| ||||||| |
|
|
| T |
26697891 |
gagatagtggaggatgttaaggttttgtcgtggagatggtgtttgagtcggttgaatttgccggcttgtttgttttacgaatggaattggaacccaaaag |
26697792 |
T |
|
| Q |
584 |
agtgtcttttgcg |
596 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26697791 |
agtgtcttttgcg |
26697779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 402 - 536
Target Start/End: Complemental strand, 34800229 - 34800095
Alignment:
| Q |
402 |
gttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgttgctgagatagtggaggtgatt |
501 |
Q |
| |
|
|||||||||||| |||||||| ||||| | ||||||||| |||||||||| || || |||||| || ||||| | ||| ||| ||||||||| |||| |
|
|
| T |
34800229 |
gttgatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgatt |
34800130 |
T |
|
| Q |
502 |
aaggttttgtcgtggaggtggactttgagtcgttt |
536 |
Q |
| |
|
|||||||||| |||||| |||| ||||||||||| |
|
|
| T |
34800129 |
aaggttttgtagtggagatggatgttgagtcgttt |
34800095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 536
Target Start/End: Original strand, 11888984 - 11889034
Alignment:
| Q |
486 |
gatagtggaggtgattaaggttttgtcgtggaggtggactttgagtcgttt |
536 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11888984 |
gatagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgttt |
11889034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 2489 - 2540
Alignment:
| Q |
401 |
ggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcg |
452 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
2489 |
ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg |
2540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 44685886 - 44685839
Alignment:
| Q |
282 |
ggtgtggaatggtttgtggagatggcttggtttatccttggtgttacc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44685886 |
ggtgtggaatgctttgtggagatggcttggtttttccttggtgttacc |
44685839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 41572709 - 41572651
Alignment:
| Q |
403 |
ttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaa |
461 |
Q |
| |
|
||||||||||| |||| || ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
41572709 |
ttgatttggcatgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
41572651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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