View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_22 (Length: 538)
Name: NF1145_low_22
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Original strand, 42524057 - 42524556
Alignment:
| Q |
11 |
acaatattgtctttggtcaaaacctctgcacaaaccaagtgaaattaaaatccactaattgtatggtcgacactttatattgaagacatatttgggtgtc |
110 |
Q |
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| T |
42524057 |
acaatattgtctttggtcaaaacctctgcacaaaccaagtgaaattaaaatccactaattgtatcgtcgacacattatattgaagacatatttgggtgtc |
42524156 |
T |
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| Q |
111 |
caacaatacaaatacatgtaattaaattcaattacttataaattgattaatgatcattggtatagtctccgtgtgagagtggaagttgcaaagtaagtaa |
210 |
Q |
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| T |
42524157 |
caacaataccaatacatgtaattaaattcaattacttataaattgattaatgatcattagtatcgtctccgtgtgagagtggaagttgcaaagt----aa |
42524252 |
T |
|
| Q |
211 |
gtaattatagttgaattgaaaaagagaaaggaaggaaaaaccttctcctttgagtttgttccaggcagattcaagaccagtagttaactgaccaaacatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42524253 |
gtaattatagttgaattgaaaaagagaaaggaaggaaaaaccttctcctttgagtttgttccaggcagattcaagaccagtagttaactgaccaaacatt |
42524352 |
T |
|
| Q |
311 |
tcagctctgaccacaactggacgaatcatatccattcttctcacagttacgcttttcgactgaacaaaaccccatatctctttctg-----aaaccaaac |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42524353 |
tcagctctgaccacaactggacgaatcatatccattcttctcatagttacgcttttcgactgaacaaaaccccatatctctttctgaaaccaaaccaaac |
42524452 |
T |
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| Q |
406 |
caaattagtatcttatctatcaatgaatggaagagtaaccaatcagaagaatagtagatgacgtggcatgcttaccgcgaaagaattcctataagaaagg |
505 |
Q |
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| T |
42524453 |
caaattagtatcttatctatcaatgaatggaagagtaaccaatcagaagaatagtagatgacgtggcatgcttaccgcgaaagaattcctataagaaagg |
42524552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 9778202 - 9778153
Alignment:
| Q |
460 |
tagatgacgtggcatgcttaccgcgaaagaattcctataagaaagggaag |
509 |
Q |
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||||||||| ||||||||||||||||| |||||||| || |||||||||| |
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| T |
9778202 |
tagatgacgaggcatgcttaccgcgaaggaattcctgtaggaaagggaag |
9778153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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