View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_24 (Length: 516)
Name: NF1145_low_24
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_24 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 30 - 506
Target Start/End: Original strand, 47652071 - 47652546
Alignment:
| Q |
30 |
gtgtaaacaaccaactgttacaagggacaaagcatatgcaaaccnnnnnnnnnnnnnnnncaccaatgcacagaaaccctcccaatacactggactgttg |
129 |
Q |
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| T |
47652071 |
gtgtaaacaaccaactgttacaagggacaaagcatatgcaaaccaaaaaaaaaaaaata-caccaatgcacagaaaccctcccaatacactggactgttg |
47652169 |
T |
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| Q |
130 |
cgcagaaaaaaccttccataacagctgaaattgaaacatacacgacatatgcctataacagatccataattctactaaaaacccttaattctactcatgg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47652170 |
cgcagaaaaaaccttccataacagctgaaattgaaacatacacgacatatgcctataacagatccataattctaccaaaaacccttaattctactcatgg |
47652269 |
T |
|
| Q |
230 |
accatacccaagaaaaaacccaaataaaaatcataacttaattaaagaactcaccaattaatggagagatggcttggaatttgaggaagaacaagtgatt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47652270 |
accatacccaagaaaaaacccaaataaaaatcataacttaattaaagaactcaccaattaatggagagatggcttggaatttgaggaagaacaagtgatt |
47652369 |
T |
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| Q |
330 |
gaaaacaaaacaataattggaacatttttctttatgaacgaaattcaaagatggaggaggaaagataaatttctagtaatgaaaaatttgggtggaagat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
47652370 |
gaaaacaaaacaataattggaacatttttctttatgaacgaaattcaaagatggaggaggaaagatgagtttctagtaatgaaaaatttgggtggaagat |
47652469 |
T |
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| Q |
430 |
gaaattagagaacaataatgggtcatgcaactgtttttgtgaagaaccaaggttttccccttccttccatcttcatc |
506 |
Q |
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| T |
47652470 |
gaaattagagaacaataatgggtcatgcaactgtttttgtgaagaaccaaggttttccccttccttccatcttcatc |
47652546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 38752975 - 38752865
Alignment:
| Q |
209 |
aacccttaattctactcatggaccatacccaagaaaaaacccaaataaaaatcataacttaattaaagaactcaccaattaatggagagatggcttggaa |
308 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| || || |||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
38752975 |
aacccttatttctactcatggaccatacccaagacaaaagcccaaacaaaatcataatttaattaaagaactcaccaattaatgaagagaaagcttggaa |
38752876 |
T |
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| Q |
309 |
tttgaggaaga |
319 |
Q |
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| T |
38752875 |
tttgaggaaga |
38752865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 352
Target Start/End: Complemental strand, 38752860 - 38752809
Alignment:
| Q |
301 |
gcttggaatttgaggaagaacaagtgattgaaaacaaaacaataattggaac |
352 |
Q |
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||||||||||||| |||||||||||||||| |||||| |||| ||||||||| |
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| T |
38752860 |
gcttggaatttgatgaagaacaagtgattgcaaacaatacaagaattggaac |
38752809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 95094 - 95166
Alignment:
| Q |
250 |
caaataaaaatca-taacttaattaaagaactcaccaattaatggagagatggcttggaatttgaggaagaacaa |
323 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
95094 |
caaataaaattcaataacttaattaaagaactcaccaattaatg--gagatagattggaatttgaggaagaacaa |
95166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 94196 - 94237
Alignment:
| Q |
198 |
attctactaaaaacccttaattctactcatggaccatacccaa |
240 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
94196 |
attcaactaaaaacccttaattctactcat-gaccatacccaa |
94237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 29994506 - 29994462
Alignment:
| Q |
267 |
ttaattaaagaactcaccaattaatggagagatggcttggaattt |
311 |
Q |
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|||||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
29994506 |
ttaattaaagaactcaccgattaatgaagagaaagcttggaattt |
29994462 |
T |
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