View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_25 (Length: 514)
Name: NF1145_low_25
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 210 - 450
Target Start/End: Original strand, 29149725 - 29149964
Alignment:
| Q |
210 |
tataaatttattattctgtaccattattacaaaaattaatataatggtagaatgtttgtggttactggttagtaccccatatcaaaataatatttatagt |
309 |
Q |
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| T |
29149725 |
tataaatttattcttctgtaccattattacaaaaattaatatgatggtagaatgtttgtggttactggttagtaccc-atatcaaaataatatttatagt |
29149823 |
T |
|
| Q |
310 |
tatccagatttcaaattctagatcacaaattttagatgagtgggagaaagggatgaggagaagaaaataaatgaagttgtttgagtggttggataagcaa |
409 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29149824 |
tacccagatttcaaattctagatcacagattttagatgagtgggaggaagggatgaggagaagaaaataaatgaagttgtttgagtggttggataagcaa |
29149923 |
T |
|
| Q |
410 |
ttttacccaaatttgagtagtgatttttgtgcttttctatg |
450 |
Q |
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| T |
29149924 |
ttttacccaaatttgagtggtgatttttgtgcttttctatg |
29149964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 29149301 - 29149506
Alignment:
| Q |
12 |
ataggcaaaatatacaaaggtttacggcaaacaagaaaataagccacaattaggtgtgaaattgatttaatagccgcaaccctccacagaaaaatccaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29149301 |
ataggcaaaatatacaaaggtttacggcaaacaagaaaataagccacaattaggtgtgaaattgatttaatagccgcaaccctccacagaaaaatccaaa |
29149400 |
T |
|
| Q |
112 |
atgctagccaaacttggtagaaatgcactgattaatacgannnnnnngttgttgttgataaaatgaaattgattaggagtactagtattacccattgcta |
211 |
Q |
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| T |
29149401 |
aagctagccaaacttggtagaaacgcactgattaatacgatttttttgttgttgttgataaaatgaaattgattaggagtacgagtattacccattgcta |
29149500 |
T |
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| Q |
212 |
taaatt |
217 |
Q |
| |
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|||||| |
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| T |
29149501 |
taaatt |
29149506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 485
Target Start/End: Original strand, 29152188 - 29152227
Alignment:
| Q |
446 |
ctatggattgtaattgaagatggaagatgaatacactatt |
485 |
Q |
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| T |
29152188 |
ctatggattgcaatcgaagatggaagatgaatacactatt |
29152227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 291 - 478
Target Start/End: Complemental strand, 38709053 - 38708865
Alignment:
| Q |
291 |
tcaaaataatatttatagttatccagatttcaaattctagatcacaaattttagatgagtgggaga-aagggatgaggagaagaaaataaatgaagttgt |
389 |
Q |
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|||||| |||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||| |
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| T |
38709053 |
tcaaaacaatatttatagttacctagatctcaaattctagatcacagattttagatgagtgggagggaagggatgaggaaaagaaaataaatgaggttgt |
38708954 |
T |
|
| Q |
390 |
ttgagtggttggataagcaattttacccaaatttgagtagtgatttttgtgcttttctatggattgtaattgaagatggaagatgaata |
478 |
Q |
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| T |
38708953 |
ttgagtggttgggtaagcaattttacccaaatttgagtagtgattttcgtgcttttctttggattgtaaatgaagatggaagatgaata |
38708865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 38709334 - 38709093
Alignment:
| Q |
25 |
acaaaggtttacggcaaacaagaaaataagccacaattaggtgtgaaattgatttaatagccgcaaccctccacagaaaaatccaaaatgctagccaaac |
124 |
Q |
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||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||||| ||| ||| | ||| |||||||||||| ||||||||||| |
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| T |
38709334 |
acaaaggtttaatgcaaacaagaaaataagccacaattag-tctgaaattgatt-aatagcagcagccccctacataaaaatccaaaaggctagccaaac |
38709237 |
T |
|
| Q |
125 |
tt-ggtagaaatgcactgattaatacgannnnnnngttgttgttgataaaatgaaattga-ttaggagtactagtattacccattgctataaatttatta |
222 |
Q |
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|| |||||||| |||||||||||| || || ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
38709236 |
ttaggtagaaacacactgattaataggatttt----tttttgttgataaaatgaaattgaattaggagtactagtattatccattgctataaatttattc |
38709141 |
T |
|
| Q |
223 |
ttctgtaccattattacaaaaattaatataatggtagaatgtttgtgg |
270 |
Q |
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||| |||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
38709140 |
ttcattaccattattacgaaaattaatataatggtataatgtttgtgg |
38709093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 52869772 - 52869685
Alignment:
| Q |
62 |
taggtgtgaaattgatttaatagccgcaaccctccacagaaaaatcc-aaaatgctagccaaactt-ggtagaaatgcactgattaata |
148 |
Q |
| |
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| T |
52869772 |
taggtgtgaaattgattga-tagcggcagccccccacagaaaaatccaaaaaaactagccaaccttgggtagaaatacactgattaata |
52869685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 48379719 - 48379632
Alignment:
| Q |
380 |
atgaagttgtttgagtggttggataagcaattttacccaaatt--tgagtagtgatttttgtgcttttctatggattgtaattgaaga |
465 |
Q |
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|||||||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||| | ||||||| |||| || |||||| |
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| T |
48379719 |
atgaagttgtttcagttgttggataaacaattttacccaaattcatgagttctgatttttgtgttcttctatgaattgaaaatgaaga |
48379632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 84702 - 84615
Alignment:
| Q |
62 |
taggtgtgaaattgatttaatagccgcaaccctccacagaaaaatcc-aaaatgctagccaaactt-ggtagaaatgcactgattaata |
148 |
Q |
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|
|||| |||||||||||| | |||| ||| ||| |||||||||||||| |||| |||||||| ||| ||||||||| |||||||||||| |
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| T |
84702 |
taggcgtgaaattgattga-tagcggcagccccccacagaaaaatccaaaaaaactagccaaccttgggtagaaatacactgattaata |
84615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 41041016 - 41041103
Alignment:
| Q |
62 |
taggtgtgaaattgatttaatagccgcaaccctccacagaaaaatcc-aaaatgctagccaaactt-ggtagaaatgcactgattaata |
148 |
Q |
| |
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||||||||||||||||| | |||| ||| ||| |||||||||||||| |||| |||||||| ||| ||||||||| |||||||||||| |
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|
| T |
41041016 |
taggtgtgaaattgattga-tagcggcagccccccacagaaaaatccaaaaaaactagccaaccttgggtagaaatacactgattaata |
41041103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 39149090 - 39149003
Alignment:
| Q |
62 |
taggtgtgaaattgatttaatagccgcaaccctccacagaaaaatcc-aaaatgctagccaaactt-ggtagaaatgcactgattaata |
148 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||| |||||||||||||| |||| ||||||| ||| ||||||||| |||||||||||| |
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| T |
39149090 |
taggtgtgaaattgattga-tagcggcagccccccacagaaaaatccaaaaaaattagccaaccttgggtagaaatacactgattaata |
39149003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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