View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_26 (Length: 513)
Name: NF1145_low_26
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 51 - 423
Target Start/End: Complemental strand, 27227516 - 27227145
Alignment:
| Q |
51 |
agatggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattcacaacactcagcaacagaaacactgataataa |
150 |
Q |
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| T |
27227516 |
agatggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattgacaacactcagcaacagaaacactgataataa |
27227417 |
T |
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| Q |
151 |
ttaaaaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcatcaga |
250 |
Q |
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| T |
27227416 |
ttaaaaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcatcaga |
27227317 |
T |
|
| Q |
251 |
gactcgtcacacttcctcttgcttccttggaggacggcggcgccatcgtttcttctgctgggctatgagaagtgacttcattaaagtcaactttttaaat |
350 |
Q |
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| T |
27227316 |
gactcatcacacttcctcttgcttcgttgcaggatagcggcgccatcgtttcttctgctgggctatgagaagtgacttcattaaactcaactttataaat |
27227217 |
T |
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| Q |
351 |
tgacaaaaaattcaacatttttaataaattatccgtttacttttcaaaagttattactccgtacttatttgat |
423 |
Q |
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| T |
27227216 |
tgacaaaaaagtcaacatttttaataaattatccgtttacttttc-aatgttatgactccgtacttatttgat |
27227145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 753154 - 753126
Alignment:
| Q |
68 |
cataagctcaaataagtaaatccaaacaa |
96 |
Q |
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| T |
753154 |
cataagctcaaataagtaaatccaaacaa |
753126 |
T |
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