View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_29 (Length: 505)
Name: NF1145_low_29
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 30 - 492
Target Start/End: Complemental strand, 54904198 - 54903736
Alignment:
| Q |
30 |
ataacattaatttaagtccaattgatgattcaaatgcagttacagattcctctagcttccaagacatcggagccactgtcaataatgcaaatgtttctct |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904198 |
ataacattaatttaagtccaattgatgattcaaatgcagttacagattcctctagcttccaagacatcggagccactgtcaataatgcaaatgtttctct |
54904099 |
T |
|
| Q |
130 |
ttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactctcatgttgaaggtgctgctgtgacaacacaatcttttaac |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54904098 |
ttcttgcatctcaagcaatcacatacaaacacataaatcaggagcatttatcaatcactctcatgttgaaggtgctgctgtgaaaacacaatcttttaac |
54903999 |
T |
|
| Q |
230 |
cccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgaggattttaacaatgatcaaatgttgcacaataactttaagtttgctt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54903998 |
cccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgaggattttaacaatgatcaaatgttgcacaataactttaagtttgctt |
54903899 |
T |
|
| Q |
330 |
ctcccagttctcatttttcttcgacagacatggttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctcc |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54903898 |
ctcccagttctcatttttcttcgacagacattgttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctcc |
54903799 |
T |
|
| Q |
430 |
atggtacacacaacatcaaaatgcgagttcttccttcaacaataccttggattatcttgcttc |
492 |
Q |
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| T |
54903798 |
atggtacacacaacatcaaaatgcgagttcttccttcaacaataccttggattatcttgcttc |
54903736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 31 - 482
Target Start/End: Complemental strand, 54888075 - 54887603
Alignment:
| Q |
31 |
taacattaatttaagtccaattgatgattcaaatgcagttacagattcctctagcttccaagacatcggagccactgtcaataatgcaaatgtttctctt |
130 |
Q |
| |
|
|||||| || |||||||||||||||||||||| |||| |||||||||| ||| |||||||||||||| |||| | ||| |||||||||||| || |||| |
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| T |
54888075 |
taacatgaaattaagtccaattgatgattcaagtgcatttacagattcttctggcttccaagacatcagagctaatgttaataatgcaaatagttttctt |
54887976 |
T |
|
| Q |
131 |
tcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactctcatgttgaaggtgctgctgtgacaacacaatcttttaacc |
230 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| ||| |||||| || |||||| | ||||| |||| ||||| || | | |||||||||||| |
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| T |
54887975 |
tcttgcatctcaagcaatcacctacaaacacataattcaagagcattcataaatcacccatctgttggaggtcctgctatggaacaaaaatcttttaacc |
54887876 |
T |
|
| Q |
231 |
ccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgaggattttaacaatgatcaaatgttgcacaataactttaagtttgcttc |
330 |
Q |
| |
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| | ||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||| | ||||||| ||| |||||||| || |
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| T |
54887875 |
ctgctacaagtggttcctataactttgcttccaatccttctccattgagtgaggattttaataatgatcaaatatctcacaatagcttaaagtttgcctc |
54887776 |
T |
|
| Q |
331 |
tcccagttctc---------------------atttttcttcgacagacatggttgctgttcctttggaggaaacaatgcaatgtcaagatggcttactt |
409 |
Q |
| |
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| |||||||| |||||||||||| | | | ||| ||||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
54887775 |
actcagttctcaatttaagaaaaatccagatgatttttcttcgatacgcgtcattgatgttcctttagaggaaacgatgcaatgtcaagatggattactt |
54887676 |
T |
|
| Q |
410 |
gggaatgttataaatgctccatggtacacacaacatcaaaatgcgagttcttccttcaacaataccttggatt |
482 |
Q |
| |
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|||| |||| ||| ||| |||| ||||| || || ||||||| | ||||||||||||||||||||||||||| |
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| T |
54887675 |
gggagtgttgtaacggcttcatgttacacgcatcagcaaaatgtgggttcttccttcaacaataccttggatt |
54887603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 38 - 342
Target Start/End: Complemental strand, 54893692 - 54893388
Alignment:
| Q |
38 |
aatttaagtccaattgatgattcaaatgcagttacagattcctctagcttccaagacatcggagccactgtcaataatgcaaatgtttctctttcttgca |
137 |
Q |
| |
|
||||||| |||||||||| || ||| ||| |||||| ||| ||| |||||||||||||| ||| ||||| |||||||||||| |||||||||||||| |
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| T |
54893692 |
aatttaaatccaattgattatacaagtgcttttacagtttcttctggcttccaagacatcagagatactgttaataatgcaaatagttctctttcttgca |
54893593 |
T |
|
| Q |
138 |
tctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactctcatgttgaaggtgctgctgtgacaacacaatcttttaaccccgtcac |
237 |
Q |
| |
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||||||||||| || || ||||||||| |||| ||||||| | ||||||||| ||||| ||| ||| ||| | || |||||||||| || | || |
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|
| T |
54893592 |
tctcaagcaataacctatcaacacataattcaggagcatttgtaaatcactcttctgttggaggggcttacgtggaaccaaaatcttttaatcctgctac |
54893493 |
T |
|
| Q |
238 |
aagtggttcctctaactttgcttccaattctgttccattgagtgaggattttaacaatgatcaaatgttgcacaataactttaagtttgcttctcccagt |
337 |
Q |
| |
|
| |||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||| ||| || ||||| ||||||||| |
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| T |
54893492 |
atatggttcatctaactttgcttccaatccttctccattgagtgaggattttaacaatgatcaaatttctggcaatagcttaaattttgcctctcccagt |
54893393 |
T |
|
| Q |
338 |
tctca |
342 |
Q |
| |
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||||| |
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|
| T |
54893392 |
tctca |
54893388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 363 - 492
Target Start/End: Complemental strand, 54893352 - 54893220
Alignment:
| Q |
363 |
ttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctccatggtacaca---caacatcaaaatgcgagttc |
459 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| || || ||||||| || || |
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| T |
54893352 |
ttgctgttccttcggaggaagcgatgcaatgtcaagatggcttacttgggaatgttgtaaaggcttcatgttacacgacgcagcagcaaaatgtcagctc |
54893253 |
T |
|
| Q |
460 |
ttccttcaacaataccttggattatcttgcttc |
492 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| |
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| T |
54893252 |
ttccttcaacaataccttggactctcttgcttc |
54893220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 11186426 - 11186503
Alignment:
| Q |
113 |
aatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactct |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||| |||| | || |||| ||||||||||||||||||| |
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|
| T |
11186426 |
aatgcaaattgttctctttcttgcatctcaagcaatcaactactaacataaaattcagcagcatttatcaatcactct |
11186503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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