View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_30 (Length: 504)
Name: NF1145_low_30
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_30 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 247 - 494
Target Start/End: Complemental strand, 6861 - 6618
Alignment:
| Q |
247 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttctttgatctcctcttccataaatagtcttgatatgatgacattcttttcttccga |
346 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6861 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttctttgatctcctcttccata----gtcttgatatgatgacattcttttcttccga |
6766 |
T |
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| Q |
347 |
taaagaagggaaagcagctccatctagctcgggtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
446 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6765 |
taaagaagggaaagcagctccatctagctcgagtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
6666 |
T |
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| Q |
447 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6665 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
6618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 6911 - 6879
Alignment:
| Q |
98 |
tgtggcatatttaccacgggattagggtaataa |
130 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6911 |
tgtggcatatttaccacgggattagggtaataa |
6879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 247 - 494
Target Start/End: Original strand, 23385607 - 23385850
Alignment:
| Q |
247 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttctttgatctcctcttccataaatagtcttgatatgatgacattcttttcttccga |
346 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23385607 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttctttgatctcctcttccata----gtcttgatatgatgacattcttttcttccga |
23385702 |
T |
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| Q |
347 |
taaagaagggaaagcagctccatctagctcgggtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
446 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23385703 |
taaagaagggaaagcagctccatctagctcgagtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
23385802 |
T |
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| Q |
447 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
494 |
Q |
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| T |
23385803 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
23385850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 23385557 - 23385589
Alignment:
| Q |
98 |
tgtggcatatttaccacgggattagggtaataa |
130 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
23385557 |
tgtggcatatttaccacgggattagggtaataa |
23385589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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