View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_31 (Length: 498)

Name: NF1145_low_31
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_31
NF1145_low_31
[»] chr7 (1 HSPs)
chr7 (13-498)||(35828823-35829320)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 498
Target Start/End: Original strand, 35828823 - 35829320
Alignment:
Q  13 aatattcaagttctagtatacacaaaataaaatgagaccaaatagactcaaatggataaaactgtgcatgtaaaatgtgaaattttgttccttatttata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35828823 aatattcaagttctagtatacacaaaataaaatgagaccaaatagactcaaatggataaaactgtgcatgtaaaatgtgaaattttgttccttatttata 35828922  T
Q  113 aatattttacccnnnnnnnaaactcggtatcta---------------tagataaattgtagtgtttaattttatttcaaaatagccataggacaggaat 197  Q
    ||| ||||||||       |||||| |||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35828923 aat-ttttaccctttttt-aaactcagtatctaatcaattatcgactatagataaattgtagtgtttaattttatttcaaaatagccataggacaggaat 35829020  T
Q  198 ataatagcggtgtatataaacgnnnnnnnnnttgttactcatagaatatgagaaaatttgggtttttttcttcnnnnnnnnnttgagaaaacttggacaa 297  Q
    ||||||||||||||||||||||         |||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  35829021 ataatagcggtgtatataaacgaaaaaaaa-ttgttactcaaagaatatgagaaaatttgggtttttttcttcaaaaaaaaattgagaaaacttggacaa 35829119  T
Q  298 cacgtnnnnnnnnttcattacatctaattttctatttaaaatcaagattcaaccatattaaatttcatattagtgaccaatgaggctacgtctagcaaca 397  Q
    || ||        |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35829120 catgtaaaaaaatttcattgcatataattttctatttaaaatcaagattcaaccgtattaaatttcatattagtgaccaatgaggctacgtctagcaaca 35829219  T
Q  398 aaggagaatgaaaaagacacaatcgaaagaggtactcacatttaatttccggtacactttggatatgattactccggcgcgaatggaacttgtggggaaa 497  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||    
T  35829220 aaggagaatgaaaaagacacaatcgaaagaggtactgacatttaatttccggtacattttggatatgattactccggcgcgaatggaacttatgggaaaa 35829319  T

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