View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_32 (Length: 491)
Name: NF1145_low_32
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_32 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 108 - 491
Target Start/End: Complemental strand, 7548000 - 7547617
Alignment:
| Q |
108 |
atagaacaaataatacatcaaagaagttgccaagttcctcgacataaataaaagagaaatactctaatgacaaggtgaaaattatcagcatgttttagta |
207 |
Q |
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| T |
7548000 |
atagaacaaataatacatcaaagaagttgccaagttcctcgacataaataaaagagaaatactctaatgacaaggtgaaaattatcagcatgttttagta |
7547901 |
T |
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| Q |
208 |
cctgggaacaaggtgtagcttcctgggtacatagtgcatgtagacaatatgccacacacaactcatgataaatgggaattgatttggtacacatctcacc |
307 |
Q |
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| T |
7547900 |
cctgtgaacaaggtgtagcttcctgggtacatagtgcacgtagacaatatgccacacacaactcatgataaatgggaattgatttggtacacatctcacc |
7547801 |
T |
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| Q |
308 |
agaaatctccttctgtggaagtggacttcatattaatggcttatgcatctttaatacaaagagctttacagaaaataggcggtagatatttgagggagac |
407 |
Q |
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| T |
7547800 |
agaaatctccttctgtggaagtggacttcatattaatggcttatgcatctttaatacaaagagctttacagaaaataggcagtagatatttgagggagac |
7547701 |
T |
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| Q |
408 |
actagaagaaccaaacagcttaccattattatgattgcttctgacaaacactgaatgcagtcccgaagaccaactatgccgtat |
491 |
Q |
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| T |
7547700 |
actagaagaaccaaacagcttaccattattatgattgcttctgacaaacactgaatgcagtcccgaagaccaactatgccgtat |
7547617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 160 - 469
Target Start/End: Complemental strand, 1129194 - 1128892
Alignment:
| Q |
160 |
agagaaatactctaatgacaaggtgaaaattatcagcatgttttagtacctgggaacaaggtgtagcttcctgggtacatagtgcatgtagacaatatgc |
259 |
Q |
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| T |
1129194 |
agagaaatagtttaatgacaaagtggaaattaccagcatgttttagtacctgtgaagagggttcagcttcctgggtacatagtgcacgtagacaatatgc |
1129095 |
T |
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| Q |
260 |
cacacacaactcatgataaatgggaattgatttggtacacatctcaccagaaatctccttctgtggaagtggacttcatattaatggcttatgcatcttt |
359 |
Q |
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| T |
1129094 |
aacacacagctgattataaatgggaattgaattggtacacatctcaccagaaatctccttctgcagaagtggacttcatattaatggcctatgcatctct |
1128995 |
T |
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| Q |
360 |
aatacaaagagctttacagaaaataggcggtagatatttgagggagacactagaagaaccaaacagcttaccattattatgattgcttctgacaaacact |
459 |
Q |
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| T |
1128994 |
aatatatagagctttacagaaaatagaggttagatatttgagggagacac-------accagacagcttaccaaaatgatgattgcttctgacaaacact |
1128902 |
T |
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| Q |
460 |
gaatgcagtc |
469 |
Q |
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| T |
1128901 |
gaatgcagtc |
1128892 |
T |
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