View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_33 (Length: 489)
Name: NF1145_low_33
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 42086973 - 42087354
Alignment:
| Q |
18 |
accaagttcatcttaattaactgatcatctagagtttaagatgattacatatatgatgtatccacttttgatcattagctcaccaaatttgcaagcttat |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42086973 |
accaagttcatcttaattaactgatcttctagagtttaagatgattacatatatgatgtatccacttttgatcattagctcaccaaatttgcaagcatat |
42087072 |
T |
|
| Q |
118 |
ccaaaataaatccaaatgaccaaatccatcaacatttagttttgtttaattaagcttttcttggataaatgattcttgcataaggttttgcagcattttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087073 |
ccaaaataaatccaaatgaccaaatccatcaacatttggttttgtttaattaagcttttcttggataaatgattcttgcataaggttttgcagcattttg |
42087172 |
T |
|
| Q |
218 |
tttgtcaataccatcattcattcctaacnnnnnnnggtcacctaaaatcaaaaccacaaacatataacctagaaagcaaacacaacattcataatgcata |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087173 |
tttgtcaataccatcattcattcctaacaaaaaaaggtcacctaaaatcaaaaccacaaacatataacctagaaagcaaacacaacattcataatgcata |
42087272 |
T |
|
| Q |
318 |
actcccacatacaaaatc---caacatccaaaattttaagacaaaaatacaataccacctataatcaaaatcataaaccaaa |
396 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42087273 |
actcccacatacaaaatcccacaacatccaaaattttaagacaaaaatacaataacacctataatcaaaatcataaaccaaa |
42087354 |
T |
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