View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_35 (Length: 469)
Name: NF1145_low_35
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 24 - 417
Target Start/End: Complemental strand, 47380738 - 47380344
Alignment:
| Q |
24 |
tcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47380738 |
tcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaa |
47380639 |
T |
|
| Q |
124 |
gtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgtcaagacaccnnnnnnntatgctaaaattccatatctaagaacttaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
47380638 |
gtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgtcaagacgccaaaaaa-tatgctaaaattccatatctaagaacttaa |
47380540 |
T |
|
| Q |
224 |
aacggacccaatacagaaactcaaaacaacaacacaatcatatgactaaatacaacgcaaggtgctccagaactagtctaaccatcttgatgcaagaaag |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47380539 |
aacggacccaatacagaaactcaaaacaacaacacaatcatatgactaaatacaacgcaaggtgctccagaactagtctaaccatcttgatgcaagaaag |
47380440 |
T |
|
| Q |
324 |
ttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaaatcatat--atgcattgagcaacttgaacatgtctgtggtgctg |
417 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |
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| T |
47380439 |
ttactttccagtcaaaatgtagtattggaagtaaatgggcaaatatgttgaaatcatattaatacattgagcaacttgaacatgtttgtggtgctg |
47380344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 417
Target Start/End: Complemental strand, 47816209 - 47815813
Alignment:
| Q |
24 |
tcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
47816209 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
47816110 |
T |
|
| Q |
124 |
gtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgtca----agacaccnnnnnnntatgctaaaattccatatctaagaac |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
47816109 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgtcactcaagacaccaaaaaa-tatgctaaaattccatatctaagaac |
47816011 |
T |
|
| Q |
220 |
ttaaaacggacccaatacagaaactcaaaacaacaacacaatcatatgactaaatacaacgcaaggtgctccagaactagtctaaccatcttgatgcaag |
319 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
47816010 |
ttaaaacagacccaatacagaaactcaaaacaacaacacaatcatatgactaaatacaa-ggaaggtgcttcagaactagtctaaccatcttgatgcaag |
47815912 |
T |
|
| Q |
320 |
aaagttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaaatcatat--atgcattgagcaacttgaacatgtctgtggtgctg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| | |||||||||||| ||||| || |||||| |||||||||||||| || ||||||| |
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|
| T |
47815911 |
aaagttactttccagtcaaaatgtagtattagaagtaaatggac-aatatgttgaaaacatattaatacattgatcaacttgaacatgtttgcggtgctg |
47815813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 45112830 - 45112703
Alignment:
| Q |
24 |
tcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaa |
123 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||| ||||| || |||| |
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|
| T |
45112830 |
tcatcgataaaaagtattatatcatcactttgtttgatttcttccatcagtttcttcaacctctcctcaaactcaccacggtatttggttccggctacaa |
45112731 |
T |
|
| Q |
124 |
gtagacccatatccagggttataaccta |
151 |
Q |
| |
|
| | |||||| || |||||||||||||| |
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|
| T |
45112730 |
gcaaacccatgtctagggttataaccta |
45112703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 417
Target Start/End: Complemental strand, 17717949 - 17717552
Alignment:
| Q |
24 |
tcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
17717949 |
tcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaa |
17717850 |
T |
|
| Q |
124 |
gtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgtca----agacaccnnnnnnntatgctaaaattccatatctaagaac |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
17717849 |
gtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgtcactcaagacaccaaaaaa-tatgctaaaattccatatctaagaac |
17717751 |
T |
|
| Q |
220 |
ttaaaacggacccaatacagaaactcaaaa-caacaacacaatcatatgactaaatacaacgcaaggtgctccagaactagtctaaccatcttgatgcaa |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |
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|
| T |
17717750 |
ttaaaacagacccaatacagaaactcaaaaacaacaacacaatcatatgactaaatacaagg-aaggtgcttcagaactagtctaaccatcttgatgcaa |
17717652 |
T |
|
| Q |
319 |
gaaagttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaaatcatat--atgcattgagcaacttgaacatgtctgtggtgct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||| ||||| || |||||| |||||||||||||| || |||||| |
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|
| T |
17717651 |
gaaagttactttccagtcaaaatgtagtattagaagtaaatggac-aatatgttgaaaacatattaatacattgaacaacttgaacatgtttgcggtgct |
17717553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 40243625 - 40243470
Alignment:
| Q |
24 |
tcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| |
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|
| T |
40243625 |
tcatcaatgaaaagtattatttcatcgctttgtttgatttcctccattagttttttcaatctttcttcaaattctccacggtatttagttccagctacaa |
40243526 |
T |
|
| Q |
124 |
gtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgtca |
179 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
40243525 |
gtagacccatatctagggttataacctgcatcatgcagaacaaggctttcacgtca |
40243470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 414
Target Start/End: Original strand, 34055921 - 34056037
Alignment:
| Q |
299 |
gtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggtagtaaatgggcaaatatgttgaaatcatat--atgcattgagcaac |
396 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||||||||||||||||| | ||||||||| | |||||||||||||||||| || || ||||||| |
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|
| T |
34055921 |
gtctaaccatcttgatacaagacaattacttcccagtcaaaatgtagtattagaagtaaatggac-aatatgttgaaatcatattaataaatggagcaac |
34056019 |
T |
|
| Q |
397 |
ttgaacatgtctgtggtg |
414 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
34056020 |
ttgaacatgtttgtggtg |
34056037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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