View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_39 (Length: 461)

Name: NF1145_low_39
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_39
NF1145_low_39
[»] chr8 (1 HSPs)
chr8 (70-450)||(39853393-39853773)
[»] scaffold0002 (1 HSPs)
scaffold0002 (158-380)||(465651-465874)
[»] chr5 (1 HSPs)
chr5 (158-400)||(35897026-35897269)
[»] chr3 (2 HSPs)
chr3 (158-380)||(52055060-52055283)
chr3 (158-380)||(53574670-53574893)
[»] chr2 (2 HSPs)
chr2 (158-380)||(30199815-30200038)
chr2 (254-352)||(26028314-26028413)
[»] chr1 (2 HSPs)
chr1 (158-380)||(31354584-31354807)
chr1 (158-364)||(16991887-16992094)
[»] chr7 (1 HSPs)
chr7 (159-391)||(6639322-6639555)
[»] chr4 (1 HSPs)
chr4 (158-352)||(20275170-20275365)
[»] chr6 (1 HSPs)
chr6 (166-224)||(32448051-32448109)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 70 - 450
Target Start/End: Original strand, 39853393 - 39853773
Alignment:
Q  70 ggaatagatcaaagataatgggagtataaatctcagacatttcttggaagatatgaggatatgagttcttgagtcttggannnnnnnnggcgtgtttcat 169  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||        ||||||||||||    
T  39853393 ggaatagatcaaagataatgggagtataaatctcagacatttgttgaaagatatgaggatatgagttcttgagtcttggattttttttggcgtgtttcat 39853492  T
Q  170 attcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcataaaacttttaat 269  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39853493 attcacacttcaactctttatatcgcttttcttctacaataacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcataaaacttttaat 39853592  T
Q  270 atctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttcttatgtaacaagatgcccatttctcgttcatattgtaaactc 369  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39853593 atccgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttcttatgtaacaagatgcccatttctccttcatattgtaaactc 39853692  T
Q  370 tttgcagccaaatgtttttcttaacatcatatgtatcaagaagggttctccaaccttcttcaaaactttcttcatcttcat 450  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  39853693 gttgctgccaaatgtttttcttaacatcatatgtatcaagaagggttctccagccttcttcaaaactttgttcatcttcat 39853773  T

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Target: scaffold0002 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 380
Target Start/End: Original strand, 465651 - 465874
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |||||||  |||  |||||||| |||| ||| || | |   |||||    
T  465651 ggcgtgcttcaaattcacacttcaattctttataccgcttttcttctacaacatcttcaaaacgctcaaaaaatttaattaaatccaagttcttactcat 465750  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttc 356  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| ||| |  ||||| ||||  ||||| ||||||||||||||||||||||| ||     
T  465751 aaaatttttaatatctgcattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcttcttcatgtaacaagatgcccatttctccttt 465850  T
Q  357 atattgtaaactctttgcagccaa 380  Q
    |||||||| | |||||||| ||||    
T  465851 atattgtacattctttgcaaccaa 465874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 400
Target Start/End: Complemental strand, 35897269 - 35897026
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |||||||  |||  |||||||| |||| ||| || | |   |||||    
T  35897269 ggcgtgcttcaaattcacacttcaattctttataccgcttttcttctacaacatcttcaaaacgctcaaaaaatttaattaaatccaagttcttactcat 35897170  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttc 356  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||| ||| |  ||||| ||||  ||||| ||||||||||||||||||||||| ||     
T  35897169 aaaatttttaatatctacattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcttcttcatgtaacaagatgcccatttctccttt 35897070  T
Q  357 atattgtaaactctttgcagccaaatgtttttcttaacatcata 400  Q
    |||||||| | |||||||| |||| | ||||||| |||| ||||    
T  35897069 atattgtacattctttgcaaccaattatttttctgaacaccata 35897026  T

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Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 380
Target Start/End: Original strand, 52055060 - 52055283
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |||||||  |||  |||||||| |||| ||| || | |   |||||    
T  52055060 ggcgtgcttcaaattcacacttcaattctttataccgcttttcttctacaacatcttcaaaacgctcaaaaaatttaattaaatccaagttcttactcat 52055159  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttc 356  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| ||| |  ||||| ||||  ||||| ||||||||||||||||||||||| ||     
T  52055160 aaaatttttaatatctgcattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcttcttcatgtaacaagatgcccatttctccttt 52055259  T
Q  357 atattgtaaactctttgcagccaa 380  Q
    |||||||| | |||||||| ||||    
T  52055260 atattgtacattctttgcaaccaa 52055283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 380
Target Start/End: Original strand, 53574670 - 53574893
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |||||||  |||  |||||||| |||| ||| || | |   |||||    
T  53574670 ggcgtgcttcaaattcacacttcaattctttataccgcttttcttctacaacatcttcaaaacgctcaaaaaatttaattaaatccaagttcttactcat 53574769  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttc 356  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| ||| |  ||||| ||||  ||||| ||||||||||||||||||||||| ||     
T  53574770 aaaatttttaatatctgcattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcttcttcatgtaacaagatgcccatttctccttt 53574869  T
Q  357 atattgtaaactctttgcagccaa 380  Q
    |||||||| | |||||||| ||||    
T  53574870 atattgtacattctttgcaaccaa 53574893  T

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Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 380
Target Start/End: Original strand, 30199815 - 30200038
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |||||||  |||  |||||||| |||| ||| || | |   |||||    
T  30199815 ggcgtgcttcaaattcacacttcaattctttataccgcttttcttctacaacatcttcaaaacgctcaaaaaatttaattaaatccaagttcttactcat 30199914  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttc 356  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| ||| |  ||||| ||||  ||||| ||||||||||||||||||||||| ||     
T  30199915 aaaatttttaatatctgcattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcttcttcatgtaacaagatgcccatttctccttt 30200014  T
Q  357 atattgtaaactctttgcagccaa 380  Q
    |||||||| | |||||||| ||||    
T  30200015 atattgtacattctttgcaaccaa 30200038  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 26028314 - 26028413
Alignment:
Q  254 tcataaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaag-ctttcttatgtaacaagatgcccatttctc 352  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| | |||||  |||||||||| |||| | |||||||||||||||||||||||    
T  26028314 tcataaaacttttaatagttgcattcacactttcactaagttgggtgctgcgcattcctaatgtaaaagcctttttcatgtaacaagatgcccatttctc 26028413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 380
Target Start/End: Complemental strand, 31354807 - 31354584
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |||||||  |||  |||||||| |||| ||| || | |   |||||    
T  31354807 ggcgtgcttcaaattcacacttcaattctttataccgcttttcttctacaacatcttcaaaacgctcaaaaaatttaattaaatccaagttcttactcat 31354708  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttc 356  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| ||| |  ||||| ||||  ||||| ||||||||||||||||||||||| ||     
T  31354707 aaaatttttaatatctgcattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcttcttcatgtaacaagatgcccatttctccttt 31354608  T
Q  357 atattgtaaactctttgcagccaa 380  Q
    |||||||| | |||||||| ||||    
T  31354607 atattgtacattctttgcaaccaa 31354584  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 158 - 364
Target Start/End: Complemental strand, 16992094 - 16991887
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |||||||  |||  |||||||| |||| ||| || | |   |||||    
T  16992094 ggcgtgcttcaaattcacacttcaattctttataccgcttttcttctacaacatcttcaaaacgctcaaaaaatttaattaaatccaagttcttactcat 16991995  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttc 356  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| ||| |  ||||| ||||  ||||| ||||||||||||||||||||||| ||     
T  16991994 aaaatttttaatatctgcattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcttcttcatgtaacaagatgcccatttctccttt 16991895  T
Q  357 atattgta 364  Q
    ||||||||    
T  16991894 atattgta 16991887  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 159 - 391
Target Start/End: Complemental strand, 6639555 - 6639322
Alignment:
Q  159 gcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcata 258  Q
    ||||| |||||||||||| ||||| || || | | |||||| || ||| ||| | ||||||||||| || |||||||| ||||  || |  ||  | |||    
T  6639555 gcgtgcttcatattcacatttcaattcatttttttgcttttgttgtaccacatcctcaaagtgcttaaagaatttgataatattcaacttgacattgata 6639456  T
Q  259 aaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaagctttctt-atgtaacaagatgcccatttctcgttca 357  Q
    |||||||||||||||||||||||||||||||| ||||| || |||| ||| |  ||||||||||||||||| |||||||| |||||||||||||| || |    
T  6639455 aaacttttaatatctgcattcacactttcacttagttgagtacttcgcatgcctaatgtaaaagctttcttcatgtaacatgatgcccatttctccttta 6639356  T
Q  358 tattgtaaactctttgcagccaaatgtttttctt 391  Q
    ||   || | ||||||||||||| | ||||||||    
T  6639355 tagactacattctttgcagccaactatttttctt 6639322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 352
Target Start/End: Complemental strand, 20275365 - 20275170
Alignment:
Q  158 ggcgtgtttcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgcttgaaaaatttgattatatcgaaatccacgctcat 257  Q
    |||||| |||| ||||||||||||| | ||||||  ||||||||||||||||| |||||||| |||  ||||| || |||| ||| || |||   |||||    
T  20275365 ggcgtgcttcaaattcacacttcaattatttatactgcttttcttctacaacatcttcaaagcgctaaaaaaaattaattaaatccaagtccttactcat 20275266  T
Q  258 aaaacttttaatatctgcattcacactttcactaagttgggtgcttcacattctcaatgtaaaag-ctttcttatgtaacaagatgcccatttctc 352  Q
    |||  ||||||||| |||||||||||||||||||||||| ||||||| ||| |  ||||| |||| | |  | |||||||||||||| ||||||||    
T  20275265 aaattttttaatatttgcattcacactttcactaagttgagtgcttcgcatccctaatgtcaaagtcatattcatgtaacaagatgctcatttctc 20275170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 32448051 - 32448109
Alignment:
Q  166 tcatattcacacttcaactctttatatcgcttttcttctacaacaacttcaaagtgctt 224  Q
    |||| |||| ||||||| || |||||| ||||||||| |||||||| ||||||||||||    
T  32448051 tcattttcagacttcaattcattatatagcttttcttttacaacaatttcaaagtgctt 32448109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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